Difference between revisions of "TSS:Hg 103053.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.05 |distance_to_tss=-5 |entrez_id=100151684 |gc_percent=0.502488 |gene_alias=RNU6ATAC1|U6ATAC |gene_description="RNA, U6atac small nuclear (U12-depe...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |U6ATAC= | ||
| + | |all_trans=ENST00000408749.1:4 NR_023344:4 uc010nap.2:4 U62823:4 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
| + | |distance=4 | ||
|distance_to_tss=-5 | |distance_to_tss=-5 | ||
| + | |end=134164570 | ||
|entrez_id=100151684 | |entrez_id=100151684 | ||
|gc_percent=0.502488 | |gc_percent=0.502488 | ||
|gene_alias=RNU6ATAC1|U6ATAC | |gene_alias=RNU6ATAC1|U6ATAC | ||
|gene_description="RNA, U6atac small nuclear (U12-dependent splicing)" | |gene_description="RNA, U6atac small nuclear (U12-dependent splicing)" | ||
| − | |gene_name=RNU6ATAC | + | |gene_id=100151684 |
| + | |gene_name="RNA, U6atac small nuclear (U12-dependent splicing)" | ||
| + | |gene_source=HGNC:34017 | ||
| + | |gene_symbol=RNU6ATAC | ||
| + | |gene_synonyms=RNU6ATAC1 | ||
|gene_type=snRNA | |gene_type=snRNA | ||
| + | |hgnc_mgi_id=HGNC:34017 | ||
|nearest_ensembl=ENSG00000221676 | |nearest_ensembl=ENSG00000221676 | ||
|nearest_promoter_id=NR_023344 | |nearest_promoter_id=NR_023344 | ||
|nearest_refseq=NR_023344 | |nearest_refseq=NR_023344 | ||
|nearest_unigene=Hs.545589 | |nearest_unigene=Hs.545589 | ||
| + | |num_trans=4 | ||
| + | |species=human | ||
| + | |start=134164567 | ||
| + | |strand=- | ||
|tata_box="-26(CCTTAAATAAAG,+,0.00)" | |tata_box="-26(CCTTAAATAAAG,+,0.00)" | ||
| + | |transcript_name=ENST00000408749.1 NR_023344 uc010nap.2 U62823 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103053.1 | |tss_id=hg_103053.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 19:52, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000408749.1 NR_023344 uc010nap.2 U62823 |
|---|---|
| Distance: | 4 |
| Num_trans: | 4 |
| All_trans: | ENST00000408749.1:4 NR_023344:4 uc010nap.2:4 U62823:4 |
TATA-Box annotation
| Distance to TSS: | -5 |
|---|---|
| Nearest PromoterID: | NR_023344 |
| Entrez ID: | 100151684 |
| Nearest Unigene: | Hs.545589 |
| Nearest Refseq: | NR_023344 |
| Nearest Ensembl: | ENSG00000221676 |
| Gene Name: | "RNA, U6atac small nuclear (U12-dependent splicing)" |
| Gene Alias: | RNU6ATAC1 |
| Gene Description: | "RNA, U6atac small nuclear (U12-dependent splicing)" |
| Gene Type: | snRNA |
| CpG%: | 0.05 |
| GC%: | 0.502488 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-26(CCTTAAATAAAG,+,0.00)" |
