Difference between revisions of "TSS:Mm 50218.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |R75157= | ||
|all_trans=ENSMUST00000203329.2:-36 ENSMUST00000203846.2:99 ENSMUST00000203652.2:147 NM_001289617:147 NM_001289619:147 NM_001289618:147 NM_011777:147 uc009bqz.2:147 uc009bqy.2:147 uc009bra.2:147 uc009brb.2:147 AK147812:147 ENSMUST00000070635.12:188 BC054775:188 X99063:189 ENSMUST00000203290.2:352 ENSMUST00000203401.2:352 AK161709:352 AK165290:352 ENSMUST00000203626.1:357 ENSMUST00000164375.3:358 AK031415:358 AK170571:374 AK076491:376 AK035743:377 AK090110:388 ENSMUST00000203849.1:390 AK183092:401 | |all_trans=ENSMUST00000203329.2:-36 ENSMUST00000203846.2:99 ENSMUST00000203652.2:147 NM_001289617:147 NM_001289619:147 NM_001289618:147 NM_011777:147 uc009bqz.2:147 uc009bqy.2:147 uc009bra.2:147 uc009brb.2:147 AK147812:147 ENSMUST00000070635.12:188 BC054775:188 X99063:189 ENSMUST00000203290.2:352 ENSMUST00000203401.2:352 AK161709:352 AK165290:352 ENSMUST00000203626.1:357 ENSMUST00000164375.3:358 AK031415:358 AK170571:374 AK076491:376 AK035743:377 AK090110:388 ENSMUST00000203849.1:390 AK183092:401 | ||
|chr=chr6 | |chr=chr6 | ||
| Line 6: | Line 7: | ||
|distance_to_tss=-155 | |distance_to_tss=-155 | ||
|end=42349681 | |end=42349681 | ||
| + | |end_of_center_position=42349674 | ||
|entrez_id=22793 | |entrez_id=22793 | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
| − | |gene_alias=9530098H06Rik | + | |gene_alias=9530098H06Rik |
|gene_description=zyxin | |gene_description=zyxin | ||
|gene_id=22793 | |gene_id=22793 | ||
| Line 24: | Line 26: | ||
|species=mouse | |species=mouse | ||
|start=42349665 | |start=42349665 | ||
| + | |start_of_center_position=42349673 | ||
|strand=+ | |strand=+ | ||
|transcript_name=ENSMUST00000203329.2 | |transcript_name=ENSMUST00000203329.2 | ||
Revision as of 10:00, 12 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 42349673 |
|---|---|
| End of the center position in the TSS region: | 42349674 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENSMUST00000203329.2 |
|---|---|
| Distance: | -36 |
| Num_trans: | 28 |
| All_trans: | ENSMUST00000203329.2:-36 ENSMUST00000203846.2:99 ENSMUST00000203652.2:147 NM_001289617:147 NM_001289619:147 NM_001289618:147 NM_011777:147 uc009bqz.2:147 uc009bqy.2:147 uc009bra.2:147 uc009brb.2:147 AK147812:147 ENSMUST00000070635.12:188 BC054775:188 X99063:189 ENSMUST00000203290.2:352 ENSMUST00000203401.2:352 AK161709:352 AK165290:352 ENSMUST00000203626.1:357 ENSMUST00000164375.3:358 AK031415:358 AK170571:374 AK076491:376 AK035743:377 AK090110:388 ENSMUST00000203849.1:390 AK183092:401 |
TATA-Box annotation
| Distance to TSS: | -155 |
|---|---|
| Nearest PromoterID: | NM_011777 |
| Entrez ID: | 22793 |
| Nearest Unigene: | Mm.282303 |
| Nearest Refseq: | NM_011777 |
| Nearest Ensembl: | ENSMUSG00000029860 |
| Gene Name: | zyxin |
| Gene Alias: | 9530098H06Rik |
| Gene Description: | zyxin |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
