Difference between revisions of "TSS:Hg 103101.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.08 |distance_to_tss=44 |entrez_id=402381 |gc_percent=0.691542 |gene_alias=C9orf157|NOHLH|SPATA27|TEB2|bA100C15.3|bHLHe80 |gene_description=spermatog...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |NOHLH= | ||
| + | |SPATA27= | ||
| + | |TEB2= | ||
| + | |all_trans=AY884306:1 KJ900742:6 ENST00000298466.9:-34 ENST00000425225.1:-34 NM_001101677:-34 NM_001012415:-34 uc004cgl.4:-34 uc010nbe.4:-34 AY902244:-34 BC031861:-34 | ||
| + | |bA100C15.3= | ||
| + | |bHLHe80= | ||
| + | |chr=chr9 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| + | |distance=1 | ||
|distance_to_tss=44 | |distance_to_tss=44 | ||
| + | |end=135699494 | ||
|entrez_id=402381 | |entrez_id=402381 | ||
|gc_percent=0.691542 | |gc_percent=0.691542 | ||
|gene_alias=C9orf157|NOHLH|SPATA27|TEB2|bA100C15.3|bHLHe80 | |gene_alias=C9orf157|NOHLH|SPATA27|TEB2|bA100C15.3|bHLHe80 | ||
|gene_description=spermatogenesis and oogenesis specific basic helix-loop-helix 1 | |gene_description=spermatogenesis and oogenesis specific basic helix-loop-helix 1 | ||
| − | |gene_name=SOHLH1 | + | |gene_id=402381 |
| + | |gene_name=spermatogenesis and oogenesis specific basic helix-loop-helix 1 | ||
| + | |gene_source=HGNC:27845 | ||
| + | |gene_symbol=SOHLH1 | ||
| + | |gene_synonyms=NOHLH SPATA27 TEB2 bA100C15.3 bHLHe80 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:27845 | ||
|nearest_ensembl=ENSG00000165643 | |nearest_ensembl=ENSG00000165643 | ||
|nearest_promoter_id=NM_001012415 | |nearest_promoter_id=NM_001012415 | ||
|nearest_refseq=NM_001012415 | |nearest_refseq=NM_001012415 | ||
|nearest_unigene=Hs.120464 | |nearest_unigene=Hs.120464 | ||
| + | |num_trans=10 | ||
| + | |species=human | ||
| + | |start=135699473 | ||
| + | |strand=- | ||
| + | |transcript_name=AY884306 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103101.1 | |tss_id=hg_103101.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 19:55, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AY884306 |
|---|---|
| Distance: | 1 |
| Num_trans: | 10 |
| All_trans: | AY884306:1 KJ900742:6 ENST00000298466.9:-34 ENST00000425225.1:-34 NM_001101677:-34 NM_001012415:-34 uc004cgl.4:-34 uc010nbe.4:-34 AY902244:-34 BC031861:-34 |
TATA-Box annotation
| Distance to TSS: | 44 |
|---|---|
| Nearest PromoterID: | NM_001012415 |
| Entrez ID: | 402381 |
| Nearest Unigene: | Hs.120464 |
| Nearest Refseq: | NM_001012415 |
| Nearest Ensembl: | ENSG00000165643 |
| Gene Name: | spermatogenesis and oogenesis specific basic helix-loop-helix 1 |
| Gene Alias: | C9orf157 |
| Gene Description: | spermatogenesis and oogenesis specific basic helix-loop-helix 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.691542 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
