Difference between revisions of "TSS:Hg 103130.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.135 |distance_to_tss=9448 |entrez_id=8022 |gc_percent=0.776119 |gene_alias=CPHD3|LIM3|M2-LHX3 |gene_description=LIM homeobox 3 |gene_name=LHX3 |gene...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |LIM3= | ||
| + | |M2-LHX3= | ||
| + | |all_trans=AB593129:76 AB593131:90 AB593130:114 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
| + | |distance=76 | ||
|distance_to_tss=9448 | |distance_to_tss=9448 | ||
| + | |end=136193738 | ||
|entrez_id=8022 | |entrez_id=8022 | ||
|gc_percent=0.776119 | |gc_percent=0.776119 | ||
|gene_alias=CPHD3|LIM3|M2-LHX3 | |gene_alias=CPHD3|LIM3|M2-LHX3 | ||
|gene_description=LIM homeobox 3 | |gene_description=LIM homeobox 3 | ||
| − | |gene_name= | + | |gene_id=100652835 |
| + | |gene_name=retinoblastoma-specific gene 2 | ||
| + | |gene_source=EntrezGene:100652835 | ||
| + | |gene_symbol=RBSG2 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id= | ||
|nearest_ensembl=ENSG00000107187 | |nearest_ensembl=ENSG00000107187 | ||
|nearest_promoter_id=NM_014564 | |nearest_promoter_id=NM_014564 | ||
|nearest_refseq=NM_014564 | |nearest_refseq=NM_014564 | ||
|nearest_unigene=Hs.148427 | |nearest_unigene=Hs.148427 | ||
| + | |num_trans=3 | ||
| + | |species=human | ||
| + | |start=136193711 | ||
| + | |strand=- | ||
|tata_box="-40(CCTTTTAGGCGC,+,0.00)" | |tata_box="-40(CCTTTTAGGCGC,+,0.00)" | ||
| + | |transcript_name=AB593129 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103130.1 | |tss_id=hg_103130.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 19:56, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AB593129 |
|---|---|
| Distance: | 76 |
| Num_trans: | 3 |
| All_trans: | AB593129:76 AB593131:90 AB593130:114 |
TATA-Box annotation
| Distance to TSS: | 9448 |
|---|---|
| Nearest PromoterID: | NM_014564 |
| Entrez ID: | 8022 |
| Nearest Unigene: | Hs.148427 |
| Nearest Refseq: | NM_014564 |
| Nearest Ensembl: | ENSG00000107187 |
| Gene Name: | retinoblastoma-specific gene 2 |
| Gene Alias: | CPHD3 |
| Gene Description: | LIM homeobox 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.776119 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-40(CCTTTTAGGCGC,+,0.00)" |
