Difference between revisions of "TSS:Hg 103153.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.04 |distance_to_tss=34 |entrez_id=64170 |gc_percent=0.666667 |gene_alias=CANDF2|hCARD9 |gene_description=caspase recruitment domain family member 9...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000481053.5:0 ENST00000489932.2:0 ENST00000556340.1:0 uc064xbk.1:0 uc064xbo.1:0 uc064xbp.1:0 BC070091:0 AF311287:0 BC035805:0 BC008877:0 AK292081:0 AK024001:0 AK295647:0 AK309043:0 ENST00000371734.7:-4 ENST00000371732.9:-4 NM_052814:-4 NM_052813:-4 uc004chg.4:-4 uc064xbm.1:-4 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| + | |distance=0 | ||
|distance_to_tss=34 | |distance_to_tss=34 | ||
| + | |end=136373677 | ||
|entrez_id=64170 | |entrez_id=64170 | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
|gene_alias=CANDF2|hCARD9 | |gene_alias=CANDF2|hCARD9 | ||
|gene_description=caspase recruitment domain family member 9 | |gene_description=caspase recruitment domain family member 9 | ||
| − | |gene_name=CARD9 | + | |gene_id=64170 |
| + | |gene_name=caspase recruitment domain family member 9 | ||
| + | |gene_source=HGNC:16391 | ||
| + | |gene_symbol=CARD9 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hCARD9= | ||
| + | |hgnc_mgi_id=HGNC:16391 | ||
|nearest_ensembl=ENSG00000187796 | |nearest_ensembl=ENSG00000187796 | ||
|nearest_promoter_id=NM_052813 | |nearest_promoter_id=NM_052813 | ||
|nearest_refseq=NM_052813 | |nearest_refseq=NM_052813 | ||
|nearest_unigene=Hs.694071 | |nearest_unigene=Hs.694071 | ||
| + | |num_trans=20 | ||
| + | |species=human | ||
| + | |start=136373616 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000481053.5 ENST00000489932.2 ENST00000556340.1 uc064xbk.1 uc064xbo.1 uc064xbp.1 BC070091 AF311287 BC035805 BC008877 AK292081 AK024001 AK295647 AK309043 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103153.1 | |tss_id=hg_103153.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A024R8I4 B4DIK5 Q9H257 | ||
}} | }} | ||
Revision as of 19:57, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000481053.5 ENST00000489932.2 ENST00000556340.1 uc064xbk.1 uc064xbo.1 uc064xbp.1 BC070091 AF311287 BC035805 BC008877 AK292081 AK024001 AK295647 AK309043 |
|---|---|
| Distance: | 0 |
| Num_trans: | 20 |
| All_trans: | ENST00000481053.5:0 ENST00000489932.2:0 ENST00000556340.1:0 uc064xbk.1:0 uc064xbo.1:0 uc064xbp.1:0 BC070091:0 AF311287:0 BC035805:0 BC008877:0 AK292081:0 AK024001:0 AK295647:0 AK309043:0 ENST00000371734.7:-4 ENST00000371732.9:-4 NM_052814:-4 NM_052813:-4 uc004chg.4:-4 uc064xbm.1:-4 |
TATA-Box annotation
| Distance to TSS: | 34 |
|---|---|
| Nearest PromoterID: | NM_052813 |
| Entrez ID: | 64170 |
| Nearest Unigene: | Hs.694071 |
| Nearest Refseq: | NM_052813 |
| Nearest Ensembl: | ENSG00000187796 |
| Gene Name: | caspase recruitment domain family member 9 |
| Gene Alias: | CANDF2 |
| Gene Description: | caspase recruitment domain family member 9 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
