Difference between revisions of "TSS:Hg 103200.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.045 |distance_to_tss=-148 |entrez_id=100128593 |gc_percent=0.651741 |gene_alias=- |gene_description=uncharacterized LOC100128593 |gene_name=LOC10012...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000476567.1:-3 uc064xdm.1:-3 BC040937:-3 ENST00000480584.1:154 uc064xdl.1:154 ENST00000471509.5:155 uc064xdn.1:155 ENST00000497749.5:156 ENST00000494091.5:156 uc064xdo.1:156 uc064xdp.1:156 ENST00000480347.1:158 uc064xdq.1:158 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| + | |distance=-3 | ||
|distance_to_tss=-148 | |distance_to_tss=-148 | ||
| + | |end=136746019 | ||
|entrez_id=100128593 | |entrez_id=100128593 | ||
|gc_percent=0.651741 | |gc_percent=0.651741 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=uncharacterized LOC100128593 | |gene_description=uncharacterized LOC100128593 | ||
| − | |gene_name= | + | |gene_id=158062 |
| + | |gene_name=lipocalin 6 | ||
| + | |gene_source=HGNC:17337 | ||
| + | |gene_symbol=LCN6 | ||
| + | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:17337 | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NR_033913 | |nearest_promoter_id=NR_033913 | ||
|nearest_refseq=NR_033913 | |nearest_refseq=NR_033913 | ||
|nearest_unigene=Hs.679904 | |nearest_unigene=Hs.679904 | ||
| + | |num_trans=13 | ||
| + | |species=human | ||
| + | |start=136746006 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000476567.1 uc064xdm.1 BC040937 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103200.1 | |tss_id=hg_103200.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=K7ERN5 | ||
}} | }} | ||
Revision as of 19:59, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000476567.1 uc064xdm.1 BC040937 |
|---|---|
| Distance: | -3 |
| Num_trans: | 13 |
| All_trans: | ENST00000476567.1:-3 uc064xdm.1:-3 BC040937:-3 ENST00000480584.1:154 uc064xdl.1:154 ENST00000471509.5:155 uc064xdn.1:155 ENST00000497749.5:156 ENST00000494091.5:156 uc064xdo.1:156 uc064xdp.1:156 ENST00000480347.1:158 uc064xdq.1:158 |
TATA-Box annotation
| Distance to TSS: | -148 |
|---|---|
| Nearest PromoterID: | NR_033913 |
| Entrez ID: | 100128593 |
| Nearest Unigene: | Hs.679904 |
| Nearest Refseq: | NR_033913 |
| Nearest Ensembl: | |
| Gene Name: | lipocalin 6 |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC100128593 |
| Gene Type: | ncRNA |
| CpG%: | 0.045 |
| GC%: | 0.651741 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
