Difference between revisions of "TSS:Hg 103267.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.08 |distance_to_tss=-14667 |entrez_id=401563 |gc_percent=0.686567 |gene_alias=- |gene_description=chromosome 9 open reading frame 139 |gene_name=C9o...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000431584.2:-146 uc064xhq.1:-146 BC008755:-360 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| + | |distance=-146 | ||
|distance_to_tss=-14667 | |distance_to_tss=-14667 | ||
| + | |end=137012803 | ||
|entrez_id=401563 | |entrez_id=401563 | ||
|gc_percent=0.686567 | |gc_percent=0.686567 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=chromosome 9 open reading frame 139 | |gene_description=chromosome 9 open reading frame 139 | ||
| − | |gene_name= | + | |gene_id=20 |
| + | |gene_name=ATP binding cassette subfamily A member 2 | ||
| + | |gene_source=HGNC:32 | ||
| + | |gene_symbol=ABCA2 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:32 | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NM_207511 | |nearest_promoter_id=NM_207511 | ||
|nearest_refseq=NM_207511 | |nearest_refseq=NM_207511 | ||
|nearest_unigene=Hs.522509 | |nearest_unigene=Hs.522509 | ||
| + | |num_trans=3 | ||
| + | |species=human | ||
| + | |start=137012791 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000431584.2 uc064xhq.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103267.1 | |tss_id=hg_103267.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 20:02, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000431584.2 uc064xhq.1 |
|---|---|
| Distance: | -146 |
| Num_trans: | 3 |
| All_trans: | ENST00000431584.2:-146 uc064xhq.1:-146 BC008755:-360 |
TATA-Box annotation
| Distance to TSS: | -14667 |
|---|---|
| Nearest PromoterID: | NM_207511 |
| Entrez ID: | 401563 |
| Nearest Unigene: | Hs.522509 |
| Nearest Refseq: | NM_207511 |
| Nearest Ensembl: | |
| Gene Name: | ATP binding cassette subfamily A member 2 |
| Gene Alias: | - |
| Gene Description: | chromosome 9 open reading frame 139 |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.686567 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
