Difference between revisions of "TSS:Hg 103287.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.075 |distance_to_tss=2 |entrez_id=20 |gc_percent=0.681592 |gene_alias=ABC2 |gene_description=ATP binding cassette subfamily A member 2 |gene_name=AB...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000614293.4:0 ENST00000459850.5:0 ENST00000487109.5:0 NM_212533:0 uc064xhh.1:0 uc064xhj.1:0 uc064xhk.1:0 BC144588:0 BC144589:0 ENST00000625103.1:29 uc064xia.1:29 ENST00000476211.5:30 uc064xhy.1:30 ENST00000398207.8:34 uc064xhz.1:34 BC172448:35 ENST00000425423.1:100 uc064xib.1:100 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.075 | |cpg_percent=0.075 | ||
| + | |distance=0 | ||
|distance_to_tss=2 | |distance_to_tss=2 | ||
| + | |end=137028934 | ||
|entrez_id=20 | |entrez_id=20 | ||
|gc_percent=0.681592 | |gc_percent=0.681592 | ||
|gene_alias=ABC2 | |gene_alias=ABC2 | ||
|gene_description=ATP binding cassette subfamily A member 2 | |gene_description=ATP binding cassette subfamily A member 2 | ||
| − | |gene_name=ABCA2 | + | |gene_id=20 |
| + | |gene_name=ATP binding cassette subfamily A member 2 | ||
| + | |gene_source=HGNC:32 | ||
| + | |gene_symbol=ABCA2 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:32 | ||
|nearest_ensembl=ENSG00000107331 | |nearest_ensembl=ENSG00000107331 | ||
|nearest_promoter_id=NM_212533 | |nearest_promoter_id=NM_212533 | ||
|nearest_refseq=NM_001606 | |nearest_refseq=NM_001606 | ||
|nearest_unigene=Hs.421202 | |nearest_unigene=Hs.421202 | ||
| + | |num_trans=18 | ||
| + | |species=human | ||
| + | |start=137028906 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000614293.4 ENST00000459850.5 ENST00000487109.5 NM_212533 uc064xhh.1 uc064xhj.1 uc064xhk.1 BC144588 BC144589 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103287.1 | |tss_id=hg_103287.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A087WXK5 E9PGB2 Q9BZC7 | ||
}} | }} | ||
Revision as of 20:02, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000614293.4 ENST00000459850.5 ENST00000487109.5 NM_212533 uc064xhh.1 uc064xhj.1 uc064xhk.1 BC144588 BC144589 |
|---|---|
| Distance: | 0 |
| Num_trans: | 18 |
| All_trans: | ENST00000614293.4:0 ENST00000459850.5:0 ENST00000487109.5:0 NM_212533:0 uc064xhh.1:0 uc064xhj.1:0 uc064xhk.1:0 BC144588:0 BC144589:0 ENST00000625103.1:29 uc064xia.1:29 ENST00000476211.5:30 uc064xhy.1:30 ENST00000398207.8:34 uc064xhz.1:34 BC172448:35 ENST00000425423.1:100 uc064xib.1:100 |
TATA-Box annotation
| Distance to TSS: | 2 |
|---|---|
| Nearest PromoterID: | NM_212533 |
| Entrez ID: | 20 |
| Nearest Unigene: | Hs.421202 |
| Nearest Refseq: | NM_001606 |
| Nearest Ensembl: | ENSG00000107331 |
| Gene Name: | ATP binding cassette subfamily A member 2 |
| Gene Alias: | ABC2 |
| Gene Description: | ATP binding cassette subfamily A member 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.075 |
| GC%: | 0.681592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
