Difference between revisions of "TSS:Hg 103299.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.07 |distance_to_tss=-343 |entrez_id=56654 |gc_percent=0.666667 |gene_alias=CAB|CAB-|CAB-1|CAB1|NPDC-1 |gene_description="neural proliferation, diffe...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CAB-= | ||
| + | |CAB-1= | ||
| + | |CAB1= | ||
| + | |NPDC-1= | ||
| + | |all_trans=NM_015392:315 ENST00000371601.4:336 uc004ckt.3:336 AF285836:336 ENST00000485589.1:360 uc064xii.1:360 AK074793:362 AF327349:383 BC004217:431 AF272357:468 ENST00000488145.1:483 uc064xih.1:483 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
| + | |distance=315 | ||
|distance_to_tss=-343 | |distance_to_tss=-343 | ||
| + | |end=137046595 | ||
|entrez_id=56654 | |entrez_id=56654 | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
|gene_alias=CAB|CAB-|CAB-1|CAB1|NPDC-1 | |gene_alias=CAB|CAB-|CAB-1|CAB1|NPDC-1 | ||
|gene_description="neural proliferation, differentiation and control 1" | |gene_description="neural proliferation, differentiation and control 1" | ||
| − | |gene_name=NPDC1 | + | |gene_id=56654 |
| + | |gene_name="neural proliferation, differentiation and control, 1" | ||
| + | |gene_source=HGNC:7899 | ||
| + | |gene_symbol=NPDC1 | ||
| + | |gene_synonyms=CAB- CAB1 DKFZp586J0523 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:7899 | ||
|nearest_ensembl=ENSG00000107281 | |nearest_ensembl=ENSG00000107281 | ||
|nearest_promoter_id=NM_015392 | |nearest_promoter_id=NM_015392 | ||
|nearest_refseq=NM_015392 | |nearest_refseq=NM_015392 | ||
|nearest_unigene=Hs.719906 | |nearest_unigene=Hs.719906 | ||
| + | |num_trans=12 | ||
| + | |species=human | ||
| + | |start=137046538 | ||
| + | |strand=- | ||
| + | |transcript_name=NM_015392 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103299.1 | |tss_id=hg_103299.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q9NQX5 | ||
}} | }} | ||
Revision as of 20:03, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_015392 |
|---|---|
| Distance: | 315 |
| Num_trans: | 12 |
| All_trans: | NM_015392:315 ENST00000371601.4:336 uc004ckt.3:336 AF285836:336 ENST00000485589.1:360 uc064xii.1:360 AK074793:362 AF327349:383 BC004217:431 AF272357:468 ENST00000488145.1:483 uc064xih.1:483 |
TATA-Box annotation
| Distance to TSS: | -343 |
|---|---|
| Nearest PromoterID: | NM_015392 |
| Entrez ID: | 56654 |
| Nearest Unigene: | Hs.719906 |
| Nearest Refseq: | NM_015392 |
| Nearest Ensembl: | ENSG00000107281 |
| Gene Name: | "neural proliferation, differentiation and control, 1" |
| Gene Alias: | CAB |
| Gene Description: | "neural proliferation, differentiation and control 1" |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
