Difference between revisions of "TSS:Hg 103305.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.12 |distance_to_tss=14 |entrez_id=89958 |gc_percent=0.701493 |gene_alias=C9orf140|p42.3 |gene_description=suppressor APC domain containing 2 |gene_n...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=NM_178448:0 BC048267:0 ENST00000409687.4:-12 uc011men.3:-12 DQ150361:-12 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| + | |distance=0 | ||
|distance_to_tss=14 | |distance_to_tss=14 | ||
| + | |end=137070576 | ||
|entrez_id=89958 | |entrez_id=89958 | ||
|gc_percent=0.701493 | |gc_percent=0.701493 | ||
|gene_alias=C9orf140|p42.3 | |gene_alias=C9orf140|p42.3 | ||
|gene_description=suppressor APC domain containing 2 | |gene_description=suppressor APC domain containing 2 | ||
| − | |gene_name=SAPCD2 | + | |gene_id=89958 |
| + | |gene_name=suppressor APC domain containing 2 | ||
| + | |gene_source=HGNC:28055 | ||
| + | |gene_symbol=SAPCD2 | ||
| + | |gene_synonyms=p42.3 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:28055 | ||
|nearest_ensembl=ENSG00000186193 | |nearest_ensembl=ENSG00000186193 | ||
|nearest_promoter_id=NM_178448 | |nearest_promoter_id=NM_178448 | ||
|nearest_refseq=NM_178448 | |nearest_refseq=NM_178448 | ||
|nearest_unigene=Hs.19322 | |nearest_unigene=Hs.19322 | ||
| + | |num_trans=5 | ||
| + | |p42.3= | ||
| + | |species=human | ||
| + | |start=137070548 | ||
| + | |strand=- | ||
| + | |transcript_name=NM_178448 BC048267 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103305.1 | |tss_id=hg_103305.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q86UD0 | ||
}} | }} | ||
Revision as of 20:03, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_178448 BC048267 |
|---|---|
| Distance: | 0 |
| Num_trans: | 5 |
| All_trans: | NM_178448:0 BC048267:0 ENST00000409687.4:-12 uc011men.3:-12 DQ150361:-12 |
TATA-Box annotation
| Distance to TSS: | 14 |
|---|---|
| Nearest PromoterID: | NM_178448 |
| Entrez ID: | 89958 |
| Nearest Unigene: | Hs.19322 |
| Nearest Refseq: | NM_178448 |
| Nearest Ensembl: | ENSG00000186193 |
| Gene Name: | suppressor APC domain containing 2 |
| Gene Alias: | C9orf140 |
| Gene Description: | suppressor APC domain containing 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.701493 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
