Difference between revisions of "TSS:Hg 100154.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.13 |distance_to_tss=116 |entrez_id=123 |gc_percent=0.736318 |gene_alias=ADFP|ADRP |gene_description=perilipin 2 |gene_name=PLIN2 |gene_type=protein-...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |ADRP= | ||
| + | |all_trans=ENST00000380464.7:0 ENST00000472715.1:0 uc064shk.1:0 uc064shm.1:0 AK296125:0 AK312983:0 ENST00000380465.7:5 uc064shj.1:5 ENST00000475923.1:6 uc064shl.1:6 BC005127:9 AK297920:-19 ENST00000276914.6:-77 uc003zno.4:-77 NR_038064:-107 NM_001122:-107 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
| + | |distance=0 | ||
|distance_to_tss=116 | |distance_to_tss=116 | ||
| + | |end=19127499 | ||
|entrez_id=123 | |entrez_id=123 | ||
|gc_percent=0.736318 | |gc_percent=0.736318 | ||
|gene_alias=ADFP|ADRP | |gene_alias=ADFP|ADRP | ||
|gene_description=perilipin 2 | |gene_description=perilipin 2 | ||
| − | |gene_name=PLIN2 | + | |gene_id=123 |
| + | |gene_name=perilipin 2 | ||
| + | |gene_source=HGNC:248 | ||
| + | |gene_symbol=PLIN2 | ||
| + | |gene_synonyms=ADRP | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:248 | ||
|nearest_ensembl=ENSG00000147872 | |nearest_ensembl=ENSG00000147872 | ||
|nearest_promoter_id=NR_038064 | |nearest_promoter_id=NR_038064 | ||
|nearest_refseq=NM_001122 | |nearest_refseq=NM_001122 | ||
|nearest_unigene=Hs.3416 | |nearest_unigene=Hs.3416 | ||
| + | |num_trans=16 | ||
| + | |species=human | ||
| + | |start=19127480 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000380464.7 ENST00000472715.1 uc064shk.1 uc064shm.1 AK296125 AK312983 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100154.1 | |tss_id=hg_100154.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B4DJK9 Q5SYF3 | ||
}} | }} | ||
Revision as of 17:02, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000380464.7 ENST00000472715.1 uc064shk.1 uc064shm.1 AK296125 AK312983 |
|---|---|
| Distance: | 0 |
| Num_trans: | 16 |
| All_trans: | ENST00000380464.7:0 ENST00000472715.1:0 uc064shk.1:0 uc064shm.1:0 AK296125:0 AK312983:0 ENST00000380465.7:5 uc064shj.1:5 ENST00000475923.1:6 uc064shl.1:6 BC005127:9 AK297920:-19 ENST00000276914.6:-77 uc003zno.4:-77 NR_038064:-107 NM_001122:-107 |
TATA-Box annotation
| Distance to TSS: | 116 |
|---|---|
| Nearest PromoterID: | NR_038064 |
| Entrez ID: | 123 |
| Nearest Unigene: | Hs.3416 |
| Nearest Refseq: | NM_001122 |
| Nearest Ensembl: | ENSG00000147872 |
| Gene Name: | perilipin 2 |
| Gene Alias: | ADFP |
| Gene Description: | perilipin 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.736318 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
