Difference between revisions of "TSS:Mm 99406.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=BC030867:0 BC108338:0 AK029811:-7 ENSMUST00000133930.7:-10 ENSMUST00000100392.4:-10 NM_153544:-10 uc007lqz.1:-10 uc011yfq.1:-10 BC085317:38 |chr=chr11 |...") |
|||
| Line 6: | Line 6: | ||
|distance_to_tss=32 | |distance_to_tss=32 | ||
|end=102248937 | |end=102248937 | ||
| + | |end_of_center_position=102248915 | ||
|entrez_id=217216 | |entrez_id=217216 | ||
|gc_percent=0.542289 | |gc_percent=0.542289 | ||
| Line 24: | Line 25: | ||
|species=mouse | |species=mouse | ||
|start=102248891 | |start=102248891 | ||
| + | |start_of_center_position=102248914 | ||
|strand=+ | |strand=+ | ||
|tata_box="-65(TTCCCTTTAAGG,-,0.00),-64(TCCCTTTAAGGG,-,0.00),-63(CCCTTTAAGGGG,+,0.00),-63(CCCTTTAAGGGG,-,0.00),-62(CCTTTAAGGGGG,+,0.00),29(CGGTCTTAAAGA,-,0.00)" | |tata_box="-65(TTCCCTTTAAGG,-,0.00),-64(TCCCTTTAAGGG,-,0.00),-63(CCCTTTAAGGGG,+,0.00),-63(CCCTTTAAGGGG,-,0.00),-62(CCTTTAAGGGGG,+,0.00),29(CGGTCTTAAAGA,-,0.00)" | ||
Revision as of 10:10, 12 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 102248914 |
|---|---|
| End of the center position in the TSS region: | 102248915 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC030867 BC108338 |
|---|---|
| Distance: | 0 |
| Num_trans: | 9 |
| All_trans: | BC030867:0 BC108338:0 AK029811:-7 ENSMUST00000133930.7:-10 ENSMUST00000100392.4:-10 NM_153544:-10 uc007lqz.1:-10 uc011yfq.1:-10 BC085317:38 |
TATA-Box annotation
| Distance to TSS: | 32 |
|---|---|
| Nearest PromoterID: | NM_153544 |
| Entrez ID: | 217216 |
| Nearest Unigene: | Mm.247335 |
| Nearest Refseq: | NM_153544 |
| Nearest Ensembl: | ENSMUSG00000034773 |
| Gene Name: | cDNA sequence BC030867 |
| Gene Alias: | - |
| Gene Description: | cDNA sequence BC030867 |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.542289 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-65(TTCCCTTTAAGG,-,0.00),-64(TCCCTTTAAGGG,-,0.00),-63(CCCTTTAAGGGG,+,0.00),-63(CCCTTTAAGGGG,-,0.00),-62(CCTTTAAGGGGG,+,0.00),29(CGGTCTTAAAGA,-,0.00)" |
