Difference between revisions of "TSS:Mm 99899.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=uc007mcu.1:0 AK005039:0 AK053918:0 AK145797:0 AK051068:0 AK147188:0 AK083383:0 AK145860:0 AK027916:0 BC003461:0 ENSMUST00000049527.6:-5 NM_021880:-5 NM_...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |RIalpha= | ||
| + | |Tse-1= | ||
| + | |Tse1= | ||
|all_trans=uc007mcu.1:0 AK005039:0 AK053918:0 AK145797:0 AK051068:0 AK147188:0 AK083383:0 AK145860:0 AK027916:0 BC003461:0 ENSMUST00000049527.6:-5 NM_021880:-5 NM_001313976:-5 NM_001313975:-5 ENSMUST00000106676.7:-351 BC005697:-368 AK151124:-384 AK153227:-384 AK146380:-413 AK150427:-417 AK049832:-418 uc029rpm.1:-485 HQ412668:-485 | |all_trans=uc007mcu.1:0 AK005039:0 AK053918:0 AK145797:0 AK051068:0 AK147188:0 AK083383:0 AK145860:0 AK027916:0 BC003461:0 ENSMUST00000049527.6:-5 NM_021880:-5 NM_001313976:-5 NM_001313975:-5 ENSMUST00000106676.7:-351 BC005697:-368 AK151124:-384 AK153227:-384 AK146380:-413 AK150427:-417 AK049832:-418 uc029rpm.1:-485 HQ412668:-485 | ||
|chr=chr11 | |chr=chr11 | ||
| Line 6: | Line 9: | ||
|distance_to_tss=43 | |distance_to_tss=43 | ||
|end=109651003 | |end=109651003 | ||
| + | |end_of_center_position=109650965 | ||
|entrez_id=19084 | |entrez_id=19084 | ||
|gc_percent=0.711443 | |gc_percent=0.711443 | ||
| − | |gene_alias=1300018C22Rik | + | |gene_alias=1300018C22Rik |
|gene_description="protein kinase, cAMP dependent regulatory, type I, alpha" | |gene_description="protein kinase, cAMP dependent regulatory, type I, alpha" | ||
|gene_id=19084 | |gene_id=19084 | ||
| Line 24: | Line 28: | ||
|species=mouse | |species=mouse | ||
|start=109650925 | |start=109650925 | ||
| + | |start_of_center_position=109650964 | ||
|strand=+ | |strand=+ | ||
|transcript_name=uc007mcu.1 AK005039 AK053918 AK145797 AK051068 AK147188 AK083383 AK145860 AK027916 BC003461 | |transcript_name=uc007mcu.1 AK005039 AK053918 AK145797 AK051068 AK147188 AK083383 AK145860 AK027916 BC003461 | ||
Revision as of 11:31, 12 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 109650964 |
|---|---|
| End of the center position in the TSS region: | 109650965 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | uc007mcu.1 AK005039 AK053918 AK145797 AK051068 AK147188 AK083383 AK145860 AK027916 BC003461 |
|---|---|
| Distance: | 0 |
| Num_trans: | 23 |
| All_trans: | uc007mcu.1:0 AK005039:0 AK053918:0 AK145797:0 AK051068:0 AK147188:0 AK083383:0 AK145860:0 AK027916:0 BC003461:0 ENSMUST00000049527.6:-5 NM_021880:-5 NM_001313976:-5 NM_001313975:-5 ENSMUST00000106676.7:-351 BC005697:-368 AK151124:-384 AK153227:-384 AK146380:-413 AK150427:-417 AK049832:-418 uc029rpm.1:-485 HQ412668:-485 |
TATA-Box annotation
| Distance to TSS: | 43 |
|---|---|
| Nearest PromoterID: | NM_001313976 |
| Entrez ID: | 19084 |
| Nearest Unigene: | Mm.30039 |
| Nearest Refseq: | NM_021880 |
| Nearest Ensembl: | ENSMUSG00000020612 |
| Gene Name: | "protein kinase, cAMP dependent regulatory, type I, alpha" |
| Gene Alias: | 1300018C22Rik |
| Gene Description: | "protein kinase, cAMP dependent regulatory, type I, alpha" |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.711443 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
