Difference between revisions of "TSS:Mm 99901.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=BC003461:-470 AK145860:-478 AK027916:-478 AK083383:-491 AK147188:-499 |chr=chr11 |cpg_percent=0.09 |distance=-470 |distance_to_tss=544 |end=109651470 |e...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |RIalpha= | ||
| + | |Tse-1= | ||
| + | |Tse1= | ||
|all_trans=BC003461:-470 AK145860:-478 AK027916:-478 AK083383:-491 AK147188:-499 | |all_trans=BC003461:-470 AK145860:-478 AK027916:-478 AK083383:-491 AK147188:-499 | ||
|chr=chr11 | |chr=chr11 | ||
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|distance_to_tss=544 | |distance_to_tss=544 | ||
|end=109651470 | |end=109651470 | ||
| + | |end_of_center_position=109651465 | ||
|entrez_id=19084 | |entrez_id=19084 | ||
|gc_percent=0.61194 | |gc_percent=0.61194 | ||
| − | |gene_alias=1300018C22Rik | + | |gene_alias=1300018C22Rik |
|gene_description="protein kinase, cAMP dependent regulatory, type I, alpha" | |gene_description="protein kinase, cAMP dependent regulatory, type I, alpha" | ||
|gene_id=19084 | |gene_id=19084 | ||
| Line 24: | Line 28: | ||
|species=mouse | |species=mouse | ||
|start=109651459 | |start=109651459 | ||
| + | |start_of_center_position=109651464 | ||
|strand=+ | |strand=+ | ||
|tata_box="-8(TTTTTTAAACCG,+,0.00)" | |tata_box="-8(TTTTTTAAACCG,+,0.00)" | ||
Revision as of 11:31, 12 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 109651464 |
|---|---|
| End of the center position in the TSS region: | 109651465 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | BC003461 |
|---|---|
| Distance: | -470 |
| Num_trans: | 5 |
| All_trans: | BC003461:-470 AK145860:-478 AK027916:-478 AK083383:-491 AK147188:-499 |
TATA-Box annotation
| Distance to TSS: | 544 |
|---|---|
| Nearest PromoterID: | NM_001313976 |
| Entrez ID: | 19084 |
| Nearest Unigene: | Mm.30039 |
| Nearest Refseq: | NM_021880 |
| Nearest Ensembl: | ENSMUSG00000020612 |
| Gene Name: | "protein kinase, cAMP dependent regulatory, type I, alpha" |
| Gene Alias: | 1300018C22Rik |
| Gene Description: | "protein kinase, cAMP dependent regulatory, type I, alpha" |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.61194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-8(TTTTTTAAACCG,+,0.00)" |
