Difference between revisions of "TSS:Hg 103652.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.07 |distance_to_tss=6 |entrez_id=54906 |gc_percent=0.597015 |gene_alias=C10orf18|bA318E3.2 |gene_description=family with sequence similarity 208 mem...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000328090.9:0 NM_017782:0 uc001iij.3:0 CR936780:0 ENST00000477043.5:56 ENST00000473789.5:56 uc057rjx.1:56 uc057rjy.1:56 ENST00000496681.5:62 uc057rjz.1:62 ENST00000480839.6:79 uc057rka.1:79 | ||
| + | |bA318E3.2= | ||
| + | |chr=chr10 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
| + | |distance=0 | ||
|distance_to_tss=6 | |distance_to_tss=6 | ||
| + | |end=5684886 | ||
|entrez_id=54906 | |entrez_id=54906 | ||
|gc_percent=0.597015 | |gc_percent=0.597015 | ||
|gene_alias=C10orf18|bA318E3.2 | |gene_alias=C10orf18|bA318E3.2 | ||
|gene_description=family with sequence similarity 208 member B | |gene_description=family with sequence similarity 208 member B | ||
| − | |gene_name=FAM208B | + | |gene_id=54906 |
| + | |gene_name=family with sequence similarity 208 member B | ||
| + | |gene_source=HGNC:23484 | ||
| + | |gene_symbol=FAM208B | ||
| + | |gene_synonyms=FLJ20360 KIAA2006 bA318E3.2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:23484 | ||
|nearest_ensembl=ENSG00000108021 | |nearest_ensembl=ENSG00000108021 | ||
|nearest_promoter_id=NM_001321785 | |nearest_promoter_id=NM_001321785 | ||
|nearest_refseq=NM_017782 | |nearest_refseq=NM_017782 | ||
|nearest_unigene=Hs.610717 | |nearest_unigene=Hs.610717 | ||
| + | |num_trans=12 | ||
| + | |species=human | ||
| + | |start=5684801 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000328090.9 NM_017782 uc001iij.3 CR936780 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103652.1 | |tss_id=hg_103652.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q5VWN6 | ||
}} | }} | ||
Revision as of 20:18, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000328090.9 NM_017782 uc001iij.3 CR936780 |
|---|---|
| Distance: | 0 |
| Num_trans: | 12 |
| All_trans: | ENST00000328090.9:0 NM_017782:0 uc001iij.3:0 CR936780:0 ENST00000477043.5:56 ENST00000473789.5:56 uc057rjx.1:56 uc057rjy.1:56 ENST00000496681.5:62 uc057rjz.1:62 ENST00000480839.6:79 uc057rka.1:79 |
TATA-Box annotation
| Distance to TSS: | 6 |
|---|---|
| Nearest PromoterID: | NM_001321785 |
| Entrez ID: | 54906 |
| Nearest Unigene: | Hs.610717 |
| Nearest Refseq: | NM_017782 |
| Nearest Ensembl: | ENSG00000108021 |
| Gene Name: | family with sequence similarity 208 member B |
| Gene Alias: | C10orf18 |
| Gene Description: | family with sequence similarity 208 member B |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.597015 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
