Difference between revisions of "TSS:Hg 103715.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.03 |distance_to_tss=-65 |entrez_id=5588 |gc_percent=0.497512 |gene_alias=PRKCT|nPKC-theta |gene_description=protein kinase C theta |gene_name=PRKCQ...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000613651.1:-95 uc057rnj.1:-95 AY007155:-167 ENST00000455810.5:-281 NR_036503:-281 NR_036502:-281 uc021pmt.2:-281 ENST00000445427.1:-287 uc001ijl.4:-287 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| + | |distance=-95 | ||
|distance_to_tss=-65 | |distance_to_tss=-65 | ||
| + | |end=6580716 | ||
|entrez_id=5588 | |entrez_id=5588 | ||
|gc_percent=0.497512 | |gc_percent=0.497512 | ||
|gene_alias=PRKCT|nPKC-theta | |gene_alias=PRKCT|nPKC-theta | ||
|gene_description=protein kinase C theta | |gene_description=protein kinase C theta | ||
| − | |gene_name=PRKCQ | + | |gene_id=439949 |
| + | |gene_name=PRKCQ antisense RNA 1 | ||
| + | |gene_source=HGNC:44689 | ||
| + | |gene_symbol=PRKCQ-AS1 | ||
| + | |gene_synonyms=ENST00000414894.1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:44689 | ||
| + | |nPKC-theta= | ||
|nearest_ensembl=ENSG00000065675 | |nearest_ensembl=ENSG00000065675 | ||
|nearest_promoter_id=NM_001323265 | |nearest_promoter_id=NM_001323265 | ||
|nearest_refseq=NM_006257 | |nearest_refseq=NM_006257 | ||
|nearest_unigene=Hs.498570 | |nearest_unigene=Hs.498570 | ||
| + | |num_trans=9 | ||
| + | |species=human | ||
| + | |start=6580705 | ||
| + | |strand=+ | ||
|tata_box="19(CGCTAGAAAGGG,-,0.00),46(CCTTTTAAAATG,+,0.00)" | |tata_box="19(CGCTAGAAAGGG,-,0.00),46(CCTTTTAAAATG,+,0.00)" | ||
| + | |transcript_name=ENST00000613651.1 uc057rnj.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103715.1 | |tss_id=hg_103715.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 20:21, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000613651.1 uc057rnj.1 |
|---|---|
| Distance: | -95 |
| Num_trans: | 9 |
| All_trans: | ENST00000613651.1:-95 uc057rnj.1:-95 AY007155:-167 ENST00000455810.5:-281 NR_036503:-281 NR_036502:-281 uc021pmt.2:-281 ENST00000445427.1:-287 uc001ijl.4:-287 |
TATA-Box annotation
| Distance to TSS: | -65 |
|---|---|
| Nearest PromoterID: | NM_001323265 |
| Entrez ID: | 5588 |
| Nearest Unigene: | Hs.498570 |
| Nearest Refseq: | NM_006257 |
| Nearest Ensembl: | ENSG00000065675 |
| Gene Name: | PRKCQ antisense RNA 1 |
| Gene Alias: | PRKCT |
| Gene Description: | protein kinase C theta |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.497512 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "19(CGCTAGAAAGGG,-,0.00),46(CCTTTTAAAATG,+,0.00)" |
