Difference between revisions of "TSS:Hg 103718.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.025 |distance_to_tss=-3096 |entrez_id=5588 |gc_percent=0.527363 |gene_alias=PRKCT|nPKC-theta |gene_description=protein kinase C theta |gene_name=PRK...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000607982.5:53 ENST00000608526.5:53 ENST00000623015.3:53 ENST00000615210.4:53 ENST00000613985.4:53 uc057rnm.1:53 uc057rnn.1:53 uc057rno.1:53 uc057rnp.1:53 uc057rnq.1:53 ENST00000449648.1:-54 uc057rnl.1:-54 ENST00000414894.1:-57 uc057rnk.1:-57 ENST00000625102.3:59 uc057rnr.1:59 ENST00000624974.3:79 ENST00000623160.3:79 ENST00000624678.3:79 uc057rns.1:79 uc057rnt.1:79 uc057rnu.1:79 ENST00000625147.3:109 uc057rnv.1:109 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| + | |distance=53 | ||
|distance_to_tss=-3096 | |distance_to_tss=-3096 | ||
| + | |end=6583752 | ||
|entrez_id=5588 | |entrez_id=5588 | ||
|gc_percent=0.527363 | |gc_percent=0.527363 | ||
|gene_alias=PRKCT|nPKC-theta | |gene_alias=PRKCT|nPKC-theta | ||
|gene_description=protein kinase C theta | |gene_description=protein kinase C theta | ||
| − | |gene_name=PRKCQ | + | |gene_id= |
| + | |gene_name=PRKCQ antisense RNA 1 | ||
| + | |gene_source=HGNC:44689 | ||
| + | |gene_symbol=PRKCQ-AS1 | ||
| + | |gene_synonyms=ENST00000414894.1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:44689 | ||
| + | |nPKC-theta= | ||
|nearest_ensembl=ENSG00000065675 | |nearest_ensembl=ENSG00000065675 | ||
|nearest_promoter_id=NM_001323265 | |nearest_promoter_id=NM_001323265 | ||
|nearest_refseq=NM_006257 | |nearest_refseq=NM_006257 | ||
|nearest_unigene=Hs.498570 | |nearest_unigene=Hs.498570 | ||
| + | |num_trans=24 | ||
| + | |species=human | ||
| + | |start=6583732 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000607982.5 ENST00000608526.5 ENST00000623015.3 ENST00000615210.4 ENST00000613985.4 uc057rnm.1 uc057rnn.1 uc057rno.1 uc057rnp.1 uc057rnq.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103718.1 | |tss_id=hg_103718.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 20:21, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000607982.5 ENST00000608526.5 ENST00000623015.3 ENST00000615210.4 ENST00000613985.4 uc057rnm.1 uc057rnn.1 uc057rno.1 uc057rnp.1 uc057rnq.1 |
|---|---|
| Distance: | 53 |
| Num_trans: | 24 |
| All_trans: | ENST00000607982.5:53 ENST00000608526.5:53 ENST00000623015.3:53 ENST00000615210.4:53 ENST00000613985.4:53 uc057rnm.1:53 uc057rnn.1:53 uc057rno.1:53 uc057rnp.1:53 uc057rnq.1:53 ENST00000449648.1:-54 uc057rnl.1:-54 ENST00000414894.1:-57 uc057rnk.1:-57 ENST00000625102.3:59 uc057rnr.1:59 ENST00000624974.3:79 ENST00000623160.3:79 ENST00000624678.3:79 uc057rns.1:79 uc057rnt.1:79 uc057rnu.1:79 ENST00000625147.3:109 uc057rnv.1:109 |
TATA-Box annotation
| Distance to TSS: | -3096 |
|---|---|
| Nearest PromoterID: | NM_001323265 |
| Entrez ID: | 5588 |
| Nearest Unigene: | Hs.498570 |
| Nearest Refseq: | NM_006257 |
| Nearest Ensembl: | ENSG00000065675 |
| Gene Name: | PRKCQ antisense RNA 1 |
| Gene Alias: | PRKCT |
| Gene Description: | protein kinase C theta |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.527363 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
