Difference between revisions of "TSS:Hg 103729.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.005 |distance_to_tss=31 |entrez_id=100507127 |gc_percent=0.547264 |gene_alias=- |gene_description=long intergenic non-protein coding RNA 707 |gene_n...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000436383.1:-23 NR_038291:-23 uc001ijm.3:-23 AK094154:-23 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| + | |distance=-23 | ||
|distance_to_tss=31 | |distance_to_tss=31 | ||
| + | |end=6779637 | ||
|entrez_id=100507127 | |entrez_id=100507127 | ||
|gc_percent=0.547264 | |gc_percent=0.547264 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=long intergenic non-protein coding RNA 707 | |gene_description=long intergenic non-protein coding RNA 707 | ||
| − | |gene_name=LINC00707 | + | |gene_id=100507127 |
| + | |gene_name=long intergenic non-protein coding RNA 707 | ||
| + | |gene_source=HGNC:44691 | ||
| + | |gene_symbol=LINC00707 | ||
| + | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:44691 | ||
|nearest_ensembl=ENSG00000238266 | |nearest_ensembl=ENSG00000238266 | ||
|nearest_promoter_id=NR_038291 | |nearest_promoter_id=NR_038291 | ||
|nearest_refseq=NR_038291 | |nearest_refseq=NR_038291 | ||
|nearest_unigene=Hs.498571 | |nearest_unigene=Hs.498571 | ||
| + | |num_trans=4 | ||
| + | |species=human | ||
| + | |start=6779620 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000436383.1 NR_038291 uc001ijm.3 AK094154 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103729.1 | |tss_id=hg_103729.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 20:21, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000436383.1 NR_038291 uc001ijm.3 AK094154 |
|---|---|
| Distance: | -23 |
| Num_trans: | 4 |
| All_trans: | ENST00000436383.1:-23 NR_038291:-23 uc001ijm.3:-23 AK094154:-23 |
TATA-Box annotation
| Distance to TSS: | 31 |
|---|---|
| Nearest PromoterID: | NR_038291 |
| Entrez ID: | 100507127 |
| Nearest Unigene: | Hs.498571 |
| Nearest Refseq: | NR_038291 |
| Nearest Ensembl: | ENSG00000238266 |
| Gene Name: | long intergenic non-protein coding RNA 707 |
| Gene Alias: | - |
| Gene Description: | long intergenic non-protein coding RNA 707 |
| Gene Type: | ncRNA |
| CpG%: | 0.005 |
| GC%: | 0.547264 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
