Difference between revisions of "TSS:Hg 103746.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.045 |distance_to_tss=-115 |entrez_id=57713 |gc_percent=0.61194 |gene_alias=- |gene_description=Scm-like with four mbt domains 2 |gene_name=SFMBT2 |g...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000623134.1:0 uc057roh.1:0 AK123101:0 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| + | |distance=0 | ||
|distance_to_tss=-115 | |distance_to_tss=-115 | ||
| + | |end=7411604 | ||
|entrez_id=57713 | |entrez_id=57713 | ||
|gc_percent=0.61194 | |gc_percent=0.61194 | ||
| Line 12: | Line 16: | ||
|nearest_refseq=NM_001018039 | |nearest_refseq=NM_001018039 | ||
|nearest_unigene=Hs.407983 | |nearest_unigene=Hs.407983 | ||
| + | |num_trans=3 | ||
| + | |species=human | ||
| + | |start=7411597 | ||
| + | |strand=+ | ||
|tata_box="-34(GCTTAAATAGAG,+,0.00)" | |tata_box="-34(GCTTAAATAGAG,+,0.00)" | ||
| + | |transcript_name=ENST00000623134.1 uc057roh.1 AK123101 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103746.1 | |tss_id=hg_103746.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Revision as of 20:22, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000623134.1 uc057roh.1 AK123101 |
|---|---|
| Distance: | 0 |
| Num_trans: | 3 |
| All_trans: | ENST00000623134.1:0 uc057roh.1:0 AK123101:0 |
TATA-Box annotation
| Distance to TSS: | -115 |
|---|---|
| Nearest PromoterID: | NM_001029880 |
| Entrez ID: | 57713 |
| Nearest Unigene: | Hs.407983 |
| Nearest Refseq: | NM_001018039 |
| Nearest Ensembl: | ENSG00000198879 |
| Gene Name: | SFMBT2 |
| Gene Alias: | - |
| Gene Description: | Scm-like with four mbt domains 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.61194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-34(GCTTAAATAGAG,+,0.00)" |
