Difference between revisions of "TSS:Hg 103757.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.015 |distance_to_tss=140 |entrez_id=3698 |gc_percent=0.422886 |gene_alias=H2P|SHAP |gene_description=inter-alpha-trypsin inhibitor heavy chain 2 |ge...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |SHAP= | ||
| + | |all_trans=AK225277:0 ENST00000379587.4:-4 uc057rov.1:-4 BC132685:-18 ENST00000429820.5:-24 uc057rou.1:-24 X07173:-30 ENST00000613369.4:-32 uc057rot.1:-32 ENST00000480387.1:-36 uc057ros.1:-36 AK297334:-36 AK225329:-36 ENST00000473227.5:-58 uc057ror.1:-58 AK291379:-78 NM_002216:-131 ENST00000358415.8:-135 uc001ijs.4:-135 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| + | |distance=0 | ||
|distance_to_tss=140 | |distance_to_tss=140 | ||
| + | |end=7703423 | ||
|entrez_id=3698 | |entrez_id=3698 | ||
|gc_percent=0.422886 | |gc_percent=0.422886 | ||
|gene_alias=H2P|SHAP | |gene_alias=H2P|SHAP | ||
|gene_description=inter-alpha-trypsin inhibitor heavy chain 2 | |gene_description=inter-alpha-trypsin inhibitor heavy chain 2 | ||
| − | |gene_name=ITIH2 | + | |gene_id=3698 |
| + | |gene_name=inter-alpha-trypsin inhibitor heavy chain 2 | ||
| + | |gene_source=HGNC:6167 | ||
| + | |gene_symbol=ITIH2 | ||
| + | |gene_synonyms=H2P | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:6167 | ||
|nearest_ensembl=ENSG00000151655 | |nearest_ensembl=ENSG00000151655 | ||
|nearest_promoter_id=NM_002216 | |nearest_promoter_id=NM_002216 | ||
|nearest_refseq=NM_002216 | |nearest_refseq=NM_002216 | ||
|nearest_unigene=Hs.75285 | |nearest_unigene=Hs.75285 | ||
| + | |num_trans=19 | ||
| + | |species=human | ||
| + | |start=7703403 | ||
| + | |strand=+ | ||
|tata_box="84(CCCCATAAATGG,-,0.00),86(CCATAAATGGAC,+,0.00)" | |tata_box="84(CCCCATAAATGG,-,0.00),86(CCATAAATGGAC,+,0.00)" | ||
| + | |transcript_name=AK225277 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103757.1 | |tss_id=hg_103757.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 20:23, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AK225277 |
|---|---|
| Distance: | 0 |
| Num_trans: | 19 |
| All_trans: | AK225277:0 ENST00000379587.4:-4 uc057rov.1:-4 BC132685:-18 ENST00000429820.5:-24 uc057rou.1:-24 X07173:-30 ENST00000613369.4:-32 uc057rot.1:-32 ENST00000480387.1:-36 uc057ros.1:-36 AK297334:-36 AK225329:-36 ENST00000473227.5:-58 uc057ror.1:-58 AK291379:-78 NM_002216:-131 ENST00000358415.8:-135 uc001ijs.4:-135 |
TATA-Box annotation
| Distance to TSS: | 140 |
|---|---|
| Nearest PromoterID: | NM_002216 |
| Entrez ID: | 3698 |
| Nearest Unigene: | Hs.75285 |
| Nearest Refseq: | NM_002216 |
| Nearest Ensembl: | ENSG00000151655 |
| Gene Name: | inter-alpha-trypsin inhibitor heavy chain 2 |
| Gene Alias: | H2P |
| Gene Description: | inter-alpha-trypsin inhibitor heavy chain 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.422886 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "84(CCCCATAAATGG,-,0.00),86(CCATAAATGGAC,+,0.00)" |
