Difference between revisions of "TSS:Hg 103798.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.13 |distance_to_tss=942 |entrez_id=2625 |gc_percent=0.78607 |gene_alias=HDR|HDRS |gene_description=GATA binding protein 3 |gene_name=GATA3 |gene_typ...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |HDRS= | ||
| + | |all_trans=AB463676:0 AM392571:0 AM392688:0 CU678358:0 KJ905755:0 KJ896866:0 M69106:-95 X55037:-100 X58072:-125 X55122:-174 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
| + | |distance=0 | ||
|distance_to_tss=942 | |distance_to_tss=942 | ||
| + | |end=8055664 | ||
|entrez_id=2625 | |entrez_id=2625 | ||
|gc_percent=0.78607 | |gc_percent=0.78607 | ||
|gene_alias=HDR|HDRS | |gene_alias=HDR|HDRS | ||
|gene_description=GATA binding protein 3 | |gene_description=GATA binding protein 3 | ||
| − | |gene_name=GATA3 | + | |gene_id=2625 |
| + | |gene_name=GATA binding protein 3 | ||
| + | |gene_source=HGNC:4172 | ||
| + | |gene_symbol=GATA3 | ||
| + | |gene_synonyms=HDR | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:4172 | ||
|nearest_ensembl=ENSG00000107485 | |nearest_ensembl=ENSG00000107485 | ||
|nearest_promoter_id=NM_001002295 | |nearest_promoter_id=NM_001002295 | ||
|nearest_refseq=NM_002051 | |nearest_refseq=NM_002051 | ||
|nearest_unigene=Hs.524134 | |nearest_unigene=Hs.524134 | ||
| + | |num_trans=10 | ||
| + | |species=human | ||
| + | |start=8055628 | ||
| + | |strand=+ | ||
| + | |transcript_name=AB463676 AM392571 AM392688 CU678358 KJ905755 KJ896866 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103798.1 | |tss_id=hg_103798.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 20:24, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AB463676 AM392571 AM392688 CU678358 KJ905755 KJ896866 |
|---|---|
| Distance: | 0 |
| Num_trans: | 10 |
| All_trans: | AB463676:0 AM392571:0 AM392688:0 CU678358:0 KJ905755:0 KJ896866:0 M69106:-95 X55037:-100 X58072:-125 X55122:-174 |
TATA-Box annotation
| Distance to TSS: | 942 |
|---|---|
| Nearest PromoterID: | NM_001002295 |
| Entrez ID: | 2625 |
| Nearest Unigene: | Hs.524134 |
| Nearest Refseq: | NM_002051 |
| Nearest Ensembl: | ENSG00000107485 |
| Gene Name: | GATA binding protein 3 |
| Gene Alias: | HDR |
| Gene Description: | GATA binding protein 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.78607 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
