Difference between revisions of "TSS:Hg 1038.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.075 |distance_to_tss=516 |entrez_id=5081 |gc_percent=0.59204 |gene_alias=HUP1|PAX7B|RMS2 |gene_description=paired box 7 |gene_name=PAX7 |gene_type=p...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PAX7B= | ||
| + | |RMS2= | ||
| + | |all_trans=ENST00000420770.6:0 ENST00000400661.3:0 uc010oct.3:0 uc001baz.4:0 DQ322591:0 BC121165:0 BC121166:0 Z35141:-13 KJ897296:75 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.075 | |cpg_percent=0.075 | ||
| + | |distance=0 | ||
|distance_to_tss=516 | |distance_to_tss=516 | ||
| + | |end=18631529 | ||
|entrez_id=5081 | |entrez_id=5081 | ||
|gc_percent=0.59204 | |gc_percent=0.59204 | ||
|gene_alias=HUP1|PAX7B|RMS2 | |gene_alias=HUP1|PAX7B|RMS2 | ||
|gene_description=paired box 7 | |gene_description=paired box 7 | ||
| − | |gene_name=PAX7 | + | |gene_id=5081 |
| + | |gene_name=paired box 7 | ||
| + | |gene_source=HGNC:8621 | ||
| + | |gene_symbol=PAX7 | ||
| + | |gene_synonyms=Hup1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:8621 | ||
|nearest_ensembl=ENSG00000009709 | |nearest_ensembl=ENSG00000009709 | ||
|nearest_promoter_id=NM_002584 | |nearest_promoter_id=NM_002584 | ||
|nearest_refseq=NM_002584 | |nearest_refseq=NM_002584 | ||
|nearest_unigene=Hs.113253 | |nearest_unigene=Hs.113253 | ||
| + | |num_trans=9 | ||
| + | |species=human | ||
| + | |start=18631514 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000420770.6 ENST00000400661.3 uc010oct.3 uc001baz.4 DQ322591 BC121165 BC121166 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_1038.1 | |tss_id=hg_1038.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=P23759 | ||
}} | }} | ||
Revision as of 20:25, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000420770.6 ENST00000400661.3 uc010oct.3 uc001baz.4 DQ322591 BC121165 BC121166 |
|---|---|
| Distance: | 0 |
| Num_trans: | 9 |
| All_trans: | ENST00000420770.6:0 ENST00000400661.3:0 uc010oct.3:0 uc001baz.4:0 DQ322591:0 BC121165:0 BC121166:0 Z35141:-13 KJ897296:75 |
TATA-Box annotation
| Distance to TSS: | 516 |
|---|---|
| Nearest PromoterID: | NM_002584 |
| Entrez ID: | 5081 |
| Nearest Unigene: | Hs.113253 |
| Nearest Refseq: | NM_002584 |
| Nearest Ensembl: | ENSG00000009709 |
| Gene Name: | paired box 7 |
| Gene Alias: | HUP1 |
| Gene Description: | paired box 7 |
| Gene Type: | protein-coding |
| CpG%: | 0.075 |
| GC%: | 0.59204 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
