Difference between revisions of "TSS:Hg 11865.1"
From referenceTSS
| Line 8: | Line 8: | ||
|distance_to_tss=-27 | |distance_to_tss=-27 | ||
|end=39576890 | |end=39576890 | ||
| + | |end_of_center_position=39576877 | ||
|entrez_id=8761 | |entrez_id=8761 | ||
|gc_percent=0.80597 | |gc_percent=0.80597 | ||
| − | |gene_alias=APP-1 | + | |gene_alias=APP-1 |
|gene_description=poly(A) binding protein cytoplasmic 4 | |gene_description=poly(A) binding protein cytoplasmic 4 | ||
|gene_id=8761 | |gene_id=8761 | ||
| Line 27: | Line 28: | ||
|species=human | |species=human | ||
|start=39576862 | |start=39576862 | ||
| + | |start_of_center_position=39576876 | ||
|strand=- | |strand=- | ||
|tata_box="53(GGGTATAAATGG,-,0.00)" | |tata_box="53(GGGTATAAATGG,-,0.00)" | ||
Revision as of 22:57, 10 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 39576876 |
|---|---|
| End of the center position in the TSS region: | 39576877 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_001135654 NM_001135653 NM_003819 |
|---|---|
| Distance: | 14 |
| Num_trans: | 18 |
| All_trans: | NM_001135654:14 NM_001135653:14 NM_003819:14 ENST00000451091.2:73 uc057fcc.1:73 BC094755:73 ENST00000531243.2:76 uc057fcd.1:76 BC071591:78 ENST00000372856.7:112 uc001cdm.3:112 BC065540:112 ENST00000372857.7:119 uc010oiv.2:119 U75686:119 ENST00000372858.7:462 uc001cdl.3:462 BC029969:462 |
TATA-Box annotation
| Distance to TSS: | -27 |
|---|---|
| Nearest PromoterID: | NM_003819 |
| Entrez ID: | 8761 |
| Nearest Unigene: | Hs.169900 |
| Nearest Refseq: | NM_003819 |
| Nearest Ensembl: | ENSG00000090621 |
| Gene Name: | "poly(A) binding protein, cytoplasmic 4 (inducible form)" |
| Gene Alias: | APP-1 |
| Gene Description: | poly(A) binding protein cytoplasmic 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.17 |
| GC%: | 0.80597 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "53(GGGTATAAATGG,-,0.00)" |
