Difference between revisions of "TSS:Hg 103908.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.15 |distance_to_tss=41 |entrez_id=55176 |gc_percent=0.79602 |gene_alias=- |gene_description=Sec61 translocon alpha 2 subunit |gene_name=SEC61A2 |gen...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000441368.5:0 ENST00000475268.5:0 ENST00000298428.13:0 ENST00000495368.1:0 ENST00000304267.12:0 ENST00000472221.5:0 uc057rrz.1:0 uc057rsa.1:0 uc001ile.3:0 uc001ilf.5:0 uc001ilg.5:0 uc057rsb.1:0 AK301841:0 AK292295:0 BC026179:0 AF346603:0 AK057532:0 AK022640:0 ENST00000379033.7:-2 NR_024577:-2 NM_001142628:-2 NM_001142627:-2 NR_024576:-2 NM_018144:-2 uc010qbq.1:-2 ENST00000379051.5:-6 ENST00000379020.8:6 uc057rry.1:-6 uc057rsc.1:6 ENST00000379017.7:12 uc057rsd.1:12 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.15 | |cpg_percent=0.15 | ||
| + | |distance=0 | ||
|distance_to_tss=41 | |distance_to_tss=41 | ||
| + | |end=12129721 | ||
|entrez_id=55176 | |entrez_id=55176 | ||
|gc_percent=0.79602 | |gc_percent=0.79602 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=Sec61 translocon alpha 2 subunit | |gene_description=Sec61 translocon alpha 2 subunit | ||
| − | |gene_name=SEC61A2 | + | |gene_id=55176 |
| + | |gene_name=Sec61 translocon alpha 2 subunit | ||
| + | |gene_source=HGNC:17702 | ||
| + | |gene_symbol=SEC61A2 | ||
| + | |gene_synonyms=FLJ10578 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:17702 | ||
|nearest_ensembl=ENSG00000065665 | |nearest_ensembl=ENSG00000065665 | ||
|nearest_promoter_id=NR_024576 | |nearest_promoter_id=NR_024576 | ||
|nearest_refseq=NM_018144 | |nearest_refseq=NM_018144 | ||
|nearest_unigene=Hs.112955 | |nearest_unigene=Hs.112955 | ||
| + | |num_trans=31 | ||
| + | |species=human | ||
| + | |start=12129642 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000441368.5 ENST00000475268.5 ENST00000298428.13 ENST00000495368.1 ENST00000304267.12 ENST00000472221.5 uc057rrz.1 uc057rsa.1 uc001ile.3 uc001ilf.5 uc001ilg.5 uc057rsb.1 AK301841 AK292295 BC026179 AF346603 AK057532 AK022640 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103908.1 | |tss_id=hg_103908.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B3KQ68 C9JJV4 F2Z2C7 Q8TC24 Q9H9S3 | ||
}} | }} | ||
Revision as of 20:29, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000441368.5 ENST00000475268.5 ENST00000298428.13 ENST00000495368.1 ENST00000304267.12 ENST00000472221.5 uc057rrz.1 uc057rsa.1 uc001ile.3 uc001ilf.5 uc001ilg.5 uc057rsb.1 AK301841 AK292295 BC026179 AF346603 AK057532 AK022640 |
|---|---|
| Distance: | 0 |
| Num_trans: | 31 |
| All_trans: | ENST00000441368.5:0 ENST00000475268.5:0 ENST00000298428.13:0 ENST00000495368.1:0 ENST00000304267.12:0 ENST00000472221.5:0 uc057rrz.1:0 uc057rsa.1:0 uc001ile.3:0 uc001ilf.5:0 uc001ilg.5:0 uc057rsb.1:0 AK301841:0 AK292295:0 BC026179:0 AF346603:0 AK057532:0 AK022640:0 ENST00000379033.7:-2 NR_024577:-2 NM_001142628:-2 NM_001142627:-2 NR_024576:-2 NM_018144:-2 uc010qbq.1:-2 ENST00000379051.5:-6 ENST00000379020.8:6 uc057rry.1:-6 uc057rsc.1:6 ENST00000379017.7:12 uc057rsd.1:12 |
TATA-Box annotation
| Distance to TSS: | 41 |
|---|---|
| Nearest PromoterID: | NR_024576 |
| Entrez ID: | 55176 |
| Nearest Unigene: | Hs.112955 |
| Nearest Refseq: | NM_018144 |
| Nearest Ensembl: | ENSG00000065665 |
| Gene Name: | Sec61 translocon alpha 2 subunit |
| Gene Alias: | - |
| Gene Description: | Sec61 translocon alpha 2 subunit |
| Gene Type: | protein-coding |
| CpG%: | 0.15 |
| GC%: | 0.79602 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
