Difference between revisions of "TSS:Hg 103938.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.11 |distance_to_tss=122 |entrez_id=10133 |gc_percent=0.736318 |gene_alias=ALS12|FIP2|GLC1E|HIP7|HYPL|NRP|TFIIIA-INTP |gene_description=optineurin |g...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |FIP2= | ||
| + | |GLC1E= | ||
| + | |HIP7= | ||
| + | |HYPL= | ||
| + | |NRP= | ||
| + | |TFIIIA-INTP= | ||
| + | |all_trans=AF061034:0 ENST00000378747.7:15 uc001ilv.2:15 AF420371:15 AF420372:15 AF420373:15 ENST00000430081.5:-26 ENST00000378752.7:-26 ENST00000378748.7:-26 uc057rtj.1:-26 uc001ilw.2:-26 uc001ily.2:-26 BC032762:-26 ENST00000378757.6:-30 uc001ilx.2:-30 BC013876:-30 ENST00000482140.5:-36 uc057rti.1:-36 ENST00000487935.1:-40 uc057rth.1:-40 AK303715:-41 AK316171:-63 NM_021980:-117 NM_001008213:-117 NM_001008212:-117 NM_001008211:-117 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| + | |distance=0 | ||
|distance_to_tss=122 | |distance_to_tss=122 | ||
| + | |end=13100210 | ||
|entrez_id=10133 | |entrez_id=10133 | ||
|gc_percent=0.736318 | |gc_percent=0.736318 | ||
|gene_alias=ALS12|FIP2|GLC1E|HIP7|HYPL|NRP|TFIIIA-INTP | |gene_alias=ALS12|FIP2|GLC1E|HIP7|HYPL|NRP|TFIIIA-INTP | ||
|gene_description=optineurin | |gene_description=optineurin | ||
| − | |gene_name=OPTN | + | |gene_id=10133 |
| + | |gene_name=optineurin | ||
| + | |gene_source=HGNC:17142 | ||
| + | |gene_symbol=OPTN | ||
| + | |gene_synonyms=FIP-2 FIP2 HIP7 HYPL NRP TFIIIA-INTP | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:17142 | ||
|nearest_ensembl=ENSG00000123240 | |nearest_ensembl=ENSG00000123240 | ||
|nearest_promoter_id=NM_001008211 | |nearest_promoter_id=NM_001008211 | ||
|nearest_refseq=NM_021980 | |nearest_refseq=NM_021980 | ||
|nearest_unigene=Hs.332706 | |nearest_unigene=Hs.332706 | ||
| + | |num_trans=26 | ||
| + | |species=human | ||
| + | |start=13100198 | ||
| + | |strand=+ | ||
| + | |transcript_name=AF061034 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103938.1 | |tss_id=hg_103938.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 20:31, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AF061034 |
|---|---|
| Distance: | 0 |
| Num_trans: | 26 |
| All_trans: | AF061034:0 ENST00000378747.7:15 uc001ilv.2:15 AF420371:15 AF420372:15 AF420373:15 ENST00000430081.5:-26 ENST00000378752.7:-26 ENST00000378748.7:-26 uc057rtj.1:-26 uc001ilw.2:-26 uc001ily.2:-26 BC032762:-26 ENST00000378757.6:-30 uc001ilx.2:-30 BC013876:-30 ENST00000482140.5:-36 uc057rti.1:-36 ENST00000487935.1:-40 uc057rth.1:-40 AK303715:-41 AK316171:-63 NM_021980:-117 NM_001008213:-117 NM_001008212:-117 NM_001008211:-117 |
TATA-Box annotation
| Distance to TSS: | 122 |
|---|---|
| Nearest PromoterID: | NM_001008211 |
| Entrez ID: | 10133 |
| Nearest Unigene: | Hs.332706 |
| Nearest Refseq: | NM_021980 |
| Nearest Ensembl: | ENSG00000123240 |
| Gene Name: | optineurin |
| Gene Alias: | ALS12 |
| Gene Description: | optineurin |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.736318 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
