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Difference between revisions of "TSS:Hg 104057.1"

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(Created page with "{{TSSDetail |cpg_percent=0.1 |distance_to_tss=708 |entrez_id=100507347 |gc_percent=0.691542 |gene_alias=- |gene_description=VIM antisense RNA 1 |gene_name=VIM-AS1 |gene_type=n...")
 
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{{TSSDetail
 
{{TSSDetail
 +
|all_trans=ENST00000224237.9:0 ENST00000487938.5:0 uc057sbc.1:0 uc057sbd.1:0 AK222507:0 AK222602:0 AK056766:0 AK091813:0 AK097336:0 AK098444:0 EU794672:0 X16478:0 AK222482:0 ENST00000485947.1:4 uc057sbe.1:4 AF328728:8 BC030573:12 BC000163:12 Z19554:17 X56134:93 AK290643:111 AB590763:133 CU674070:135 KJ892377:135 CR407690:136 KU178388:136 KU178389:136 ENST00000497849.1:-399 uc057sbb.1:-399
 +
|chr=chr10
 
|cpg_percent=0.1
 
|cpg_percent=0.1
 +
|distance=0
 
|distance_to_tss=708
 
|distance_to_tss=708
 +
|end=17229287
 
|entrez_id=100507347
 
|entrez_id=100507347
 
|gc_percent=0.691542
 
|gc_percent=0.691542
 
|gene_alias=-
 
|gene_alias=-
 
|gene_description=VIM antisense RNA 1
 
|gene_description=VIM antisense RNA 1
|gene_name=VIM-AS1
+
|gene_id=7431
 +
|gene_name=vimentin
 +
|gene_source=HGNC:12692
 +
|gene_symbol=VIM
 +
|gene_synonyms=
 
|gene_type=ncRNA
 
|gene_type=ncRNA
 +
|hgnc_mgi_id=HGNC:12692
 
|nearest_ensembl=ENSG00000229124
 
|nearest_ensembl=ENSG00000229124
 
|nearest_promoter_id=NR_108061
 
|nearest_promoter_id=NR_108061
 
|nearest_refseq=NR_108060
 
|nearest_refseq=NR_108060
 
|nearest_unigene=Hs.740502
 
|nearest_unigene=Hs.740502
 +
|num_trans=29
 +
|species=human
 +
|start=17229267
 +
|strand=+
 
|tata_box="-34(GGTTATAAAAAC,-,0.00)"
 
|tata_box="-34(GGTTATAAAAAC,-,0.00)"
 +
|transcript_name=ENST00000224237.9 ENST00000487938.5 uc057sbc.1 uc057sbd.1 AK222507 AK222602 AK056766 AK091813 AK097336 AK098444 EU794672 X16478 AK222482
 +
|tss_classification=yes
 
|tss_id=hg_104057.1
 
|tss_id=hg_104057.1
 +
|tss_score=1
 +
|uniprot_id=B0YJC4 B3KRK8 Q53HU8 V9HWE1
 
}}
 
}}

Revision as of 20:36, 8 March 2018

Basic information about the TSS


TSS ID:hg_104057.1
Species:human
Chr:chr10
TSS Classification:yes
Start:17229267
End:17229287
Strand:+
TSS Score:1
Start of the center position in the TSS region:
End of the center position in the TSS region:



Gene and protein annotation


Transcript_name:ENST00000224237.9 ENST00000487938.5 uc057sbc.1 uc057sbd.1 AK222507 AK222602 AK056766 AK091813 AK097336 AK098444 EU794672 X16478 AK222482
Distance:0
GeneID:7431
HGNC/MGI_ID:HGNC:12692
UniProt_ID:B0YJC4 B3KRK8 Q53HU8 V9HWE1
Gene_name:vimentin
Gene_symbol:VIM
Gene_synonyms:
Gene_source:HGNC:12692



Transcript annotation


Transcript_name:ENST00000224237.9 ENST00000487938.5 uc057sbc.1 uc057sbd.1 AK222507 AK222602 AK056766 AK091813 AK097336 AK098444 EU794672 X16478 AK222482
Distance:0
Num_trans:29
All_trans:ENST00000224237.9:0 ENST00000487938.5:0 uc057sbc.1:0 uc057sbd.1:0 AK222507:0 AK222602:0 AK056766:0 AK091813:0 AK097336:0 AK098444:0 EU794672:0 X16478:0 AK222482:0 ENST00000485947.1:4 uc057sbe.1:4 AF328728:8 BC030573:12 BC000163:12 Z19554:17 X56134:93 AK290643:111 AB590763:133 CU674070:135 KJ892377:135 CR407690:136 KU178388:136 KU178389:136 ENST00000497849.1:-399 uc057sbb.1:-399



TATA-Box annotation


Distance to TSS:708
Nearest PromoterID:NR_108061
Entrez ID:100507347
Nearest Unigene:Hs.740502
Nearest Refseq:NR_108060
Nearest Ensembl:ENSG00000229124
Gene Name:vimentin
Gene Alias:-
Gene Description:VIM antisense RNA 1
Gene Type:ncRNA
CpG%:0.1
GC%:0.691542
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):"-34(GGTTATAAAAAC,-,0.00)"