Difference between revisions of "TSS:Hg 104061.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.04 |distance_to_tss=-761 |entrez_id=100507347 |gc_percent=0.512438 |gene_alias=- |gene_description=VIM antisense RNA 1 |gene_name=VIM-AS1 |gene_type...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000421459.2:-130 uc057sbg.1:-130 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| + | |distance=-130 | ||
|distance_to_tss=-761 | |distance_to_tss=-761 | ||
| + | |end=17230753 | ||
|entrez_id=100507347 | |entrez_id=100507347 | ||
|gc_percent=0.512438 | |gc_percent=0.512438 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=VIM antisense RNA 1 | |gene_description=VIM antisense RNA 1 | ||
| − | |gene_name=VIM | + | |gene_id=7431 |
| + | |gene_name=vimentin | ||
| + | |gene_source=HGNC:12692 | ||
| + | |gene_symbol=VIM | ||
| + | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:12692 | ||
|nearest_ensembl=ENSG00000229124 | |nearest_ensembl=ENSG00000229124 | ||
|nearest_promoter_id=NR_108061 | |nearest_promoter_id=NR_108061 | ||
|nearest_refseq=NR_108060 | |nearest_refseq=NR_108060 | ||
|nearest_unigene=Hs.740502 | |nearest_unigene=Hs.740502 | ||
| + | |num_trans=2 | ||
| + | |species=human | ||
| + | |start=17230738 | ||
| + | |strand=+ | ||
|tata_box="46(ACGTCTAAAAAG,-,0.00)" | |tata_box="46(ACGTCTAAAAAG,-,0.00)" | ||
| + | |transcript_name=ENST00000421459.2 uc057sbg.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104061.1 | |tss_id=hg_104061.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q5JVS8 | ||
}} | }} | ||
Revision as of 20:36, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000421459.2 uc057sbg.1 |
|---|---|
| Distance: | -130 |
| Num_trans: | 2 |
| All_trans: | ENST00000421459.2:-130 uc057sbg.1:-130 |
TATA-Box annotation
| Distance to TSS: | -761 |
|---|---|
| Nearest PromoterID: | NR_108061 |
| Entrez ID: | 100507347 |
| Nearest Unigene: | Hs.740502 |
| Nearest Refseq: | NR_108060 |
| Nearest Ensembl: | ENSG00000229124 |
| Gene Name: | vimentin |
| Gene Alias: | - |
| Gene Description: | VIM antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.04 |
| GC%: | 0.512438 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "46(ACGTCTAAAAAG,-,0.00)" |
