Difference between revisions of "TSS:Hg 104117.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.11 |distance_to_tss=58 |entrez_id=783 |gc_percent=0.716418 |gene_alias=CACNLB2|CAVB2|MYSB |gene_description=calcium voltage-gated channel auxiliary...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CAVB2= | ||
| + | |MYSB= | ||
| + | |all_trans=ENST00000352115.10:0 ENST00000377328.5:0 uc001ips.3:0 uc009xjz.2:0 KJ896530:0 AF137376:0 AF423191:0 AY393860:0 AY675091:0 ENST00000468177.1:6 uc057sbx.1:6 BC136409:-16 AK296471:29 ENST00000467034.1:51 uc057sby.1:51 AK311694:51 ENST00000324631.11:-53 NM_201596:-53 NM_201593:-53 NM_201597:-53 uc001ipr.3:-53 S60415:-53 NM_001167945:72 NM_201571:72 NM_201572:72 AK307526:72 AK293837:140 ENST00000282343.12:217 uc001ipu.4:217 ENST00000377331.6:439 uc001ipv.4:439 AF423190:439 AY393858:439 AY393861:439 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| + | |distance=0 | ||
|distance_to_tss=58 | |distance_to_tss=58 | ||
| + | |end=18140741 | ||
|entrez_id=783 | |entrez_id=783 | ||
|gc_percent=0.716418 | |gc_percent=0.716418 | ||
|gene_alias=CACNLB2|CAVB2|MYSB | |gene_alias=CACNLB2|CAVB2|MYSB | ||
|gene_description=calcium voltage-gated channel auxiliary subunit beta 2 | |gene_description=calcium voltage-gated channel auxiliary subunit beta 2 | ||
| − | |gene_name=CACNB2 | + | |gene_id=783 |
| + | |gene_name=calcium voltage-gated channel auxiliary subunit beta 2 | ||
| + | |gene_source=HGNC:1402 | ||
| + | |gene_symbol=CACNB2 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:1402 | ||
|nearest_ensembl=ENSG00000165995 | |nearest_ensembl=ENSG00000165995 | ||
|nearest_promoter_id=NM_201597 | |nearest_promoter_id=NM_201597 | ||
|nearest_refseq=NM_000724 | |nearest_refseq=NM_000724 | ||
|nearest_unigene=Hs.59093 | |nearest_unigene=Hs.59093 | ||
| + | |num_trans=34 | ||
| + | |species=human | ||
| + | |start=18140729 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000352115.10 ENST00000377328.5 uc001ips.3 uc009xjz.2 KJ896530 AF137376 AF423191 AY393860 AY675091 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104117.1 | |tss_id=hg_104117.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A6PVM6 Q08289 Q5UM68 | ||
}} | }} | ||
Revision as of 20:38, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000352115.10 ENST00000377328.5 uc001ips.3 uc009xjz.2 KJ896530 AF137376 AF423191 AY393860 AY675091 |
|---|---|
| Distance: | 0 |
| Num_trans: | 34 |
| All_trans: | ENST00000352115.10:0 ENST00000377328.5:0 uc001ips.3:0 uc009xjz.2:0 KJ896530:0 AF137376:0 AF423191:0 AY393860:0 AY675091:0 ENST00000468177.1:6 uc057sbx.1:6 BC136409:-16 AK296471:29 ENST00000467034.1:51 uc057sby.1:51 AK311694:51 ENST00000324631.11:-53 NM_201596:-53 NM_201593:-53 NM_201597:-53 uc001ipr.3:-53 S60415:-53 NM_001167945:72 NM_201571:72 NM_201572:72 AK307526:72 AK293837:140 ENST00000282343.12:217 uc001ipu.4:217 ENST00000377331.6:439 uc001ipv.4:439 AF423190:439 AY393858:439 AY393861:439 |
TATA-Box annotation
| Distance to TSS: | 58 |
|---|---|
| Nearest PromoterID: | NM_201597 |
| Entrez ID: | 783 |
| Nearest Unigene: | Hs.59093 |
| Nearest Refseq: | NM_000724 |
| Nearest Ensembl: | ENSG00000165995 |
| Gene Name: | calcium voltage-gated channel auxiliary subunit beta 2 |
| Gene Alias: | CACNLB2 |
| Gene Description: | calcium voltage-gated channel auxiliary subunit beta 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.716418 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
