Difference between revisions of "TSS:Hg 104236.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.1 |distance_to_tss=130 |entrez_id=100532731 |gc_percent=0.661692 |gene_alias=- |gene_description=COMMD3-BMI1 readthrough |gene_name=COMMD3-BMI1 |gen...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000417470.1:-57 uc057sfb.1:-57 ENST00000448361.5:-64 uc057sfa.1:-64 ENST00000463688.6:-68 uc057sez.1:-68 ENST00000463409.6:-77 uc057sey.1:-77 ENST00000489125.2:-78 uc057sex.1:-78 ENST00000496071.5:-80 uc057sew.1:-80 ENST00000472610.5:-81 uc057sev.1:-81 ENST00000444869.5:-89 uc057seu.1:-89 AY542159:-91 ENST00000456711.5:-92 uc057set.1:-92 ENST00000470045.1:-94 uc057ses.1:-94 AK295109:-94 KJ893368:-95 ENST00000479958.6:-100 ENST00000602390.5:-100 uc057ser.1:-100 uc009xkg.4:-100 AF078848:-100 AK128789:-100 AK313235:-100 ENST00000468179.6:-110 uc057seq.1:-110 BC022898:-113 AF201948:-120 ENST00000475460.6:-121 uc057sep.1:-121 ENST00000602574.5:-123 uc057seo.1:-123 BX647275:-123 NM_012071:-126 NM_001204062:-126 ENST00000468469.5:218 uc057sfc.1:218 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| + | |distance=-57 | ||
|distance_to_tss=130 | |distance_to_tss=130 | ||
| + | |end=22316517 | ||
|entrez_id=100532731 | |entrez_id=100532731 | ||
|gc_percent=0.661692 | |gc_percent=0.661692 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=COMMD3-BMI1 readthrough | |gene_description=COMMD3-BMI1 readthrough | ||
| − | |gene_name=COMMD3-BMI1 | + | |gene_id=100532731 |
| + | |gene_name=COMMD3-BMI1 readthrough | ||
| + | |gene_source=HGNC:48326 | ||
| + | |gene_symbol=COMMD3-BMI1 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:48326 | ||
|nearest_ensembl=ENSG00000269897 | |nearest_ensembl=ENSG00000269897 | ||
|nearest_promoter_id=NM_001204062 | |nearest_promoter_id=NM_001204062 | ||
|nearest_refseq=NM_001204062 | |nearest_refseq=NM_001204062 | ||
|nearest_unigene=Hs.380403 | |nearest_unigene=Hs.380403 | ||
| + | |num_trans=43 | ||
| + | |species=human | ||
| + | |start=22316508 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000417470.1 uc057sfb.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104236.1 | |tss_id=hg_104236.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q5T8Z1 | ||
}} | }} | ||
Revision as of 20:43, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000417470.1 uc057sfb.1 |
|---|---|
| Distance: | -57 |
| Num_trans: | 43 |
| All_trans: | ENST00000417470.1:-57 uc057sfb.1:-57 ENST00000448361.5:-64 uc057sfa.1:-64 ENST00000463688.6:-68 uc057sez.1:-68 ENST00000463409.6:-77 uc057sey.1:-77 ENST00000489125.2:-78 uc057sex.1:-78 ENST00000496071.5:-80 uc057sew.1:-80 ENST00000472610.5:-81 uc057sev.1:-81 ENST00000444869.5:-89 uc057seu.1:-89 AY542159:-91 ENST00000456711.5:-92 uc057set.1:-92 ENST00000470045.1:-94 uc057ses.1:-94 AK295109:-94 KJ893368:-95 ENST00000479958.6:-100 ENST00000602390.5:-100 uc057ser.1:-100 uc009xkg.4:-100 AF078848:-100 AK128789:-100 AK313235:-100 ENST00000468179.6:-110 uc057seq.1:-110 BC022898:-113 AF201948:-120 ENST00000475460.6:-121 uc057sep.1:-121 ENST00000602574.5:-123 uc057seo.1:-123 BX647275:-123 NM_012071:-126 NM_001204062:-126 ENST00000468469.5:218 uc057sfc.1:218 |
TATA-Box annotation
| Distance to TSS: | 130 |
|---|---|
| Nearest PromoterID: | NM_001204062 |
| Entrez ID: | 100532731 |
| Nearest Unigene: | Hs.380403 |
| Nearest Refseq: | NM_001204062 |
| Nearest Ensembl: | ENSG00000269897 |
| Gene Name: | COMMD3-BMI1 readthrough |
| Gene Alias: | - |
| Gene Description: | COMMD3-BMI1 readthrough |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.661692 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
