Difference between revisions of "TSS:Hg 104237.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.04 |distance_to_tss=797 |entrez_id=100532731 |gc_percent=0.383085 |gene_alias=- |gene_description=COMMD3-BMI1 readthrough |gene_name=COMMD3-BMI1 |ge...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000472673.5:309 uc057sfd.1:309 ENST00000468469.5:-441 uc057sfc.1:-441 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| + | |distance=309 | ||
|distance_to_tss=797 | |distance_to_tss=797 | ||
| + | |end=22317185 | ||
|entrez_id=100532731 | |entrez_id=100532731 | ||
|gc_percent=0.383085 | |gc_percent=0.383085 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=COMMD3-BMI1 readthrough | |gene_description=COMMD3-BMI1 readthrough | ||
| − | |gene_name=COMMD3 | + | |gene_id=23412 |
| + | |gene_name=COMM domain containing 3 | ||
| + | |gene_source=HGNC:23332 | ||
| + | |gene_symbol=COMMD3 | ||
| + | |gene_synonyms=BUP | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:23332 | ||
|nearest_ensembl=ENSG00000269897 | |nearest_ensembl=ENSG00000269897 | ||
|nearest_promoter_id=NM_001204062 | |nearest_promoter_id=NM_001204062 | ||
|nearest_refseq=NM_001204062 | |nearest_refseq=NM_001204062 | ||
|nearest_unigene=Hs.380403 | |nearest_unigene=Hs.380403 | ||
| + | |num_trans=4 | ||
| + | |species=human | ||
| + | |start=22317175 | ||
| + | |strand=+ | ||
|tata_box="-31(TCTTTTAAGCGA,+,0.00),44(GCTTTTAGATGA,+,0.00)" | |tata_box="-31(TCTTTTAAGCGA,+,0.00),44(GCTTTTAGATGA,+,0.00)" | ||
| + | |transcript_name=ENST00000472673.5 uc057sfd.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104237.1 | |tss_id=hg_104237.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 20:43, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000472673.5 uc057sfd.1 |
|---|---|
| Distance: | 309 |
| Num_trans: | 4 |
| All_trans: | ENST00000472673.5:309 uc057sfd.1:309 ENST00000468469.5:-441 uc057sfc.1:-441 |
TATA-Box annotation
| Distance to TSS: | 797 |
|---|---|
| Nearest PromoterID: | NM_001204062 |
| Entrez ID: | 100532731 |
| Nearest Unigene: | Hs.380403 |
| Nearest Refseq: | NM_001204062 |
| Nearest Ensembl: | ENSG00000269897 |
| Gene Name: | COMM domain containing 3 |
| Gene Alias: | - |
| Gene Description: | COMMD3-BMI1 readthrough |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.383085 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-31(TCTTTTAAGCGA,+,0.00),44(GCTTTTAGATGA,+,0.00)" |
