Difference between revisions of "TSS:Hg 104255.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.145 |distance_to_tss=46 |entrez_id=9576 |gc_percent=0.721393 |gene_alias=CT141|Repro-SA-1|pf16 |gene_description=sperm associated antigen 6 |gene_na...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |Repro-SA-1= | ||
| + | |all_trans=ENST00000376624.7:0 ENST00000456231.6:0 ENST00000488555.5:0 ENST00000313311.10:0 ENST00000435326.5:0 uc001iri.4:0 uc057sft.1:0 uc057sfu.1:0 uc001irj.4:0 uc057sfv.1:0 AK302194:0 AF079363:0 AK310247:0 AK289903:0 AL080136:0 BC030585:0 ENST00000376603.6:-11 NM_012443:-11 NM_172242:-11 NM_001253855:-11 NM_001253854:-11 uc009xkh.4:-11 AM392698:79 AM392674:79 AB527223:81 DQ894067:83 DQ890916:83 CR533552:85 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
| + | |distance=0 | ||
|distance_to_tss=46 | |distance_to_tss=46 | ||
| + | |end=22345527 | ||
|entrez_id=9576 | |entrez_id=9576 | ||
|gc_percent=0.721393 | |gc_percent=0.721393 | ||
|gene_alias=CT141|Repro-SA-1|pf16 | |gene_alias=CT141|Repro-SA-1|pf16 | ||
|gene_description=sperm associated antigen 6 | |gene_description=sperm associated antigen 6 | ||
| − | |gene_name=SPAG6 | + | |gene_id=9576 |
| + | |gene_name=sperm associated antigen 6 | ||
| + | |gene_source=HGNC:11215 | ||
| + | |gene_symbol=SPAG6 | ||
| + | |gene_synonyms=CT141 Repro-SA-1 pf16 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:11215 | ||
|nearest_ensembl=ENSG00000077327 | |nearest_ensembl=ENSG00000077327 | ||
|nearest_promoter_id=NM_001253855 | |nearest_promoter_id=NM_001253855 | ||
|nearest_refseq=NM_012443 | |nearest_refseq=NM_012443 | ||
|nearest_unigene=Hs.655170 | |nearest_unigene=Hs.655170 | ||
| + | |num_trans=28 | ||
| + | |pf16= | ||
| + | |species=human | ||
| + | |start=22345455 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000376624.7 ENST00000456231.6 ENST00000488555.5 ENST00000313311.10 ENST00000435326.5 uc001iri.4 uc057sft.1 uc057sfu.1 uc001irj.4 uc057sfv.1 AK302194 AF079363 AK310247 AK289903 AL080136 BC030585 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104255.1 | |tss_id=hg_104255.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A0A0MSY0 A0A0A0MT17 O75602 | ||
}} | }} | ||
Revision as of 20:44, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000376624.7 ENST00000456231.6 ENST00000488555.5 ENST00000313311.10 ENST00000435326.5 uc001iri.4 uc057sft.1 uc057sfu.1 uc001irj.4 uc057sfv.1 AK302194 AF079363 AK310247 AK289903 AL080136 BC030585 |
|---|---|
| Distance: | 0 |
| Num_trans: | 28 |
| All_trans: | ENST00000376624.7:0 ENST00000456231.6:0 ENST00000488555.5:0 ENST00000313311.10:0 ENST00000435326.5:0 uc001iri.4:0 uc057sft.1:0 uc057sfu.1:0 uc001irj.4:0 uc057sfv.1:0 AK302194:0 AF079363:0 AK310247:0 AK289903:0 AL080136:0 BC030585:0 ENST00000376603.6:-11 NM_012443:-11 NM_172242:-11 NM_001253855:-11 NM_001253854:-11 uc009xkh.4:-11 AM392698:79 AM392674:79 AB527223:81 DQ894067:83 DQ890916:83 CR533552:85 |
TATA-Box annotation
| Distance to TSS: | 46 |
|---|---|
| Nearest PromoterID: | NM_001253855 |
| Entrez ID: | 9576 |
| Nearest Unigene: | Hs.655170 |
| Nearest Refseq: | NM_012443 |
| Nearest Ensembl: | ENSG00000077327 |
| Gene Name: | sperm associated antigen 6 |
| Gene Alias: | CT141 |
| Gene Description: | sperm associated antigen 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.721393 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
