Difference between revisions of "TSS:Hg 104289.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.13 |distance_to_tss=191 |entrez_id=220213 |gc_percent=0.78607 |gene_alias=DUBA7|OTDC1 |gene_description=OTU deubiquitinase 1 |gene_name=OTUD1 |gene_...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |OTDC1= | ||
| + | |all_trans=ENST00000376495.4:0 uc001irr.3:0 NM_001145373:-183 AB188491:-183 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
| + | |distance=0 | ||
|distance_to_tss=191 | |distance_to_tss=191 | ||
| + | |end=23439468 | ||
|entrez_id=220213 | |entrez_id=220213 | ||
|gc_percent=0.78607 | |gc_percent=0.78607 | ||
|gene_alias=DUBA7|OTDC1 | |gene_alias=DUBA7|OTDC1 | ||
|gene_description=OTU deubiquitinase 1 | |gene_description=OTU deubiquitinase 1 | ||
| − | |gene_name=OTUD1 | + | |gene_id=220213 |
| + | |gene_name=OTU deubiquitinase 1 | ||
| + | |gene_source=HGNC:27346 | ||
| + | |gene_symbol=OTUD1 | ||
| + | |gene_synonyms=DUBA7 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:27346 | ||
|nearest_ensembl=ENSG00000165312 | |nearest_ensembl=ENSG00000165312 | ||
|nearest_promoter_id=NM_001145373 | |nearest_promoter_id=NM_001145373 | ||
|nearest_refseq=NM_001145373 | |nearest_refseq=NM_001145373 | ||
|nearest_unigene=Hs.499042 | |nearest_unigene=Hs.499042 | ||
| + | |num_trans=4 | ||
| + | |species=human | ||
| + | |start=23439451 | ||
| + | |strand=+ | ||
|tata_box="-35(GCGCCTATAAGG,-,0.00),-33(GCCTATAAGGGG,+,0.00),-33(GCCTATAAGGGG,-,0.00)" | |tata_box="-35(GCGCCTATAAGG,-,0.00),-33(GCCTATAAGGGG,+,0.00),-33(GCCTATAAGGGG,-,0.00)" | ||
| + | |transcript_name=ENST00000376495.4 uc001irr.3 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104289.1 | |tss_id=hg_104289.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q5VV17 | ||
}} | }} | ||
Revision as of 20:46, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000376495.4 uc001irr.3 |
|---|---|
| Distance: | 0 |
| Num_trans: | 4 |
| All_trans: | ENST00000376495.4:0 uc001irr.3:0 NM_001145373:-183 AB188491:-183 |
TATA-Box annotation
| Distance to TSS: | 191 |
|---|---|
| Nearest PromoterID: | NM_001145373 |
| Entrez ID: | 220213 |
| Nearest Unigene: | Hs.499042 |
| Nearest Refseq: | NM_001145373 |
| Nearest Ensembl: | ENSG00000165312 |
| Gene Name: | OTU deubiquitinase 1 |
| Gene Alias: | DUBA7 |
| Gene Description: | OTU deubiquitinase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.78607 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-35(GCGCCTATAAGG,-,0.00),-33(GCCTATAAGGGG,+,0.00),-33(GCCTATAAGGGG,-,0.00)" |
