Difference between revisions of "TSS:Hg 104390.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.095 |distance_to_tss=65 |entrez_id=2572 |gc_percent=0.696517 |gene_alias=GAD65 |gene_description=glutamate decarboxylase 2 |gene_name=GAD2 |gene_typ...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000376261.7:-55 NM_001134366:-55 NM_000818:-55 uc001isp.3:-55 BC047899:101 BC039038:123 ENST00000259271.7:282 uc001isq.3:282 M74826:282 ENST00000428517.2:350 uc009xkr.5:350 BC029517:350 M81882:375 BC126327:402 BC126329:402 AB527954:427 HQ258311:427 X69936:442 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| + | |distance=-55 | ||
|distance_to_tss=65 | |distance_to_tss=65 | ||
| + | |end=26216383 | ||
|entrez_id=2572 | |entrez_id=2572 | ||
|gc_percent=0.696517 | |gc_percent=0.696517 | ||
|gene_alias=GAD65 | |gene_alias=GAD65 | ||
|gene_description=glutamate decarboxylase 2 | |gene_description=glutamate decarboxylase 2 | ||
| − | |gene_name=GAD2 | + | |gene_id=2572 |
| + | |gene_name=glutamate decarboxylase 2 | ||
| + | |gene_source=HGNC:4093 | ||
| + | |gene_symbol=GAD2 | ||
| + | |gene_synonyms=GAD65 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:4093 | ||
|nearest_ensembl=ENSG00000136750 | |nearest_ensembl=ENSG00000136750 | ||
|nearest_promoter_id=NM_001134366 | |nearest_promoter_id=NM_001134366 | ||
|nearest_refseq=NM_000818 | |nearest_refseq=NM_000818 | ||
|nearest_unigene=Hs.231829 | |nearest_unigene=Hs.231829 | ||
| + | |num_trans=18 | ||
| + | |species=human | ||
| + | |start=26216361 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000376261.7 NM_001134366 NM_000818 uc001isp.3 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104390.1 | |tss_id=hg_104390.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q5VZ30 | ||
}} | }} | ||
Revision as of 20:50, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000376261.7 NM_001134366 NM_000818 uc001isp.3 |
|---|---|
| Distance: | -55 |
| Num_trans: | 18 |
| All_trans: | ENST00000376261.7:-55 NM_001134366:-55 NM_000818:-55 uc001isp.3:-55 BC047899:101 BC039038:123 ENST00000259271.7:282 uc001isq.3:282 M74826:282 ENST00000428517.2:350 uc009xkr.5:350 BC029517:350 M81882:375 BC126327:402 BC126329:402 AB527954:427 HQ258311:427 X69936:442 |
TATA-Box annotation
| Distance to TSS: | 65 |
|---|---|
| Nearest PromoterID: | NM_001134366 |
| Entrez ID: | 2572 |
| Nearest Unigene: | Hs.231829 |
| Nearest Refseq: | NM_000818 |
| Nearest Ensembl: | ENSG00000136750 |
| Gene Name: | glutamate decarboxylase 2 |
| Gene Alias: | GAD65 |
| Gene Description: | glutamate decarboxylase 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.696517 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
