Difference between revisions of "TSS:Hg 100238.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.145 |distance_to_tss=-146 |entrez_id=554202 |gc_percent=0.800995 |gene_alias=hsa-lnc-31 |gene_description=MIR31 host gene |gene_name=MIR31HG |gene_t...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=NR_027054:113 AK124391:113 ENST00000304425.3:142 uc003zpe.3:142 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
| + | |distance=113 | ||
|distance_to_tss=-146 | |distance_to_tss=-146 | ||
| + | |end=21559878 | ||
|entrez_id=554202 | |entrez_id=554202 | ||
|gc_percent=0.800995 | |gc_percent=0.800995 | ||
|gene_alias=hsa-lnc-31 | |gene_alias=hsa-lnc-31 | ||
|gene_description=MIR31 host gene | |gene_description=MIR31 host gene | ||
| − | |gene_name=MIR31HG | + | |gene_id=554202 |
| + | |gene_name=MIR31 host gene | ||
| + | |gene_source=HGNC:37187 | ||
| + | |gene_symbol=MIR31HG | ||
| + | |gene_synonyms=LOC554202 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:37187 | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NR_027054 | |nearest_promoter_id=NR_027054 | ||
|nearest_refseq=NR_027054 | |nearest_refseq=NR_027054 | ||
|nearest_unigene=Hs.458096 | |nearest_unigene=Hs.458096 | ||
| + | |num_trans=4 | ||
| + | |species=human | ||
| + | |start=21559810 | ||
| + | |strand=- | ||
| + | |transcript_name=NR_027054 AK124391 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100238.1 | |tss_id=hg_100238.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 17:04, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NR_027054 AK124391 |
|---|---|
| Distance: | 113 |
| Num_trans: | 4 |
| All_trans: | NR_027054:113 AK124391:113 ENST00000304425.3:142 uc003zpe.3:142 |
TATA-Box annotation
| Distance to TSS: | -146 |
|---|---|
| Nearest PromoterID: | NR_027054 |
| Entrez ID: | 554202 |
| Nearest Unigene: | Hs.458096 |
| Nearest Refseq: | NR_027054 |
| Nearest Ensembl: | |
| Gene Name: | MIR31 host gene |
| Gene Alias: | hsa-lnc-31 |
| Gene Description: | MIR31 host gene |
| Gene Type: | ncRNA |
| CpG%: | 0.145 |
| GC%: | 0.800995 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
