Difference between revisions of "TSS:Hg 104454.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.08 |distance_to_tss=125 |entrez_id=22931 |gc_percent=0.666667 |gene_alias=RAB18LI1|WARBM3 |gene_description="RAB18, member RAS oncogene family" |gen...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |WARBM3= | ||
| + | |all_trans=ENST00000490236.2:0 uc057skf.1:0 AY574034:0 AK297629:0 AK299457:0 AK295443:0 BC029350:0 AF136974:0 AF087860:0 BC015014:2 AL136734:4 ENST00000375802.7:10 uc057skg.1:10 ENST00000356940.10:-13 uc001itv.5:-13 AK223153:29 AF274957:37 ENST00000621805.4:52 uc001itw.5:52 AB464117:52 AM393142:52 BT009840:52 CU677165:52 AF498950:52 CR533455:52 AF137372:52 AK001555:52 ENST00000465772.5:59 uc057skh.1:59 ENST00000484281.1:76 uc057ski.1:76 ENST00000535776.5:-107 ENST00000611151.4:-107 NM_021252:-107 NM_001256412:-107 NM_001256411:-107 NM_001256415:-107 NM_001256410:-107 NR_046172:-107 uc010qdr.3:-107 uc031ptn.1:-107 ENST00000423465.1:301 uc057skj.1:301 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| + | |distance=0 | ||
|distance_to_tss=125 | |distance_to_tss=125 | ||
| + | |end=27504318 | ||
|entrez_id=22931 | |entrez_id=22931 | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
|gene_alias=RAB18LI1|WARBM3 | |gene_alias=RAB18LI1|WARBM3 | ||
|gene_description="RAB18, member RAS oncogene family" | |gene_description="RAB18, member RAS oncogene family" | ||
| − | |gene_name=RAB18 | + | |gene_id=22931 |
| + | |gene_name="RAB18, member RAS oncogene family" | ||
| + | |gene_source=HGNC:14244 | ||
| + | |gene_symbol=RAB18 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:14244 | ||
|nearest_ensembl=ENSG00000099246 | |nearest_ensembl=ENSG00000099246 | ||
|nearest_promoter_id=NM_001256412 | |nearest_promoter_id=NM_001256412 | ||
|nearest_refseq=NM_021252 | |nearest_refseq=NM_021252 | ||
|nearest_unigene=Hs.406799 | |nearest_unigene=Hs.406799 | ||
| + | |num_trans=43 | ||
| + | |species=human | ||
| + | |start=27504280 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000490236.2 uc057skf.1 AY574034 AK297629 AK299457 AK295443 BC029350 AF136974 AF087860 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104454.1 | |tss_id=hg_104454.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B7Z4P9 B7Z5V3 | ||
}} | }} | ||
Revision as of 20:53, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000490236.2 uc057skf.1 AY574034 AK297629 AK299457 AK295443 BC029350 AF136974 AF087860 |
|---|---|
| Distance: | 0 |
| Num_trans: | 43 |
| All_trans: | ENST00000490236.2:0 uc057skf.1:0 AY574034:0 AK297629:0 AK299457:0 AK295443:0 BC029350:0 AF136974:0 AF087860:0 BC015014:2 AL136734:4 ENST00000375802.7:10 uc057skg.1:10 ENST00000356940.10:-13 uc001itv.5:-13 AK223153:29 AF274957:37 ENST00000621805.4:52 uc001itw.5:52 AB464117:52 AM393142:52 BT009840:52 CU677165:52 AF498950:52 CR533455:52 AF137372:52 AK001555:52 ENST00000465772.5:59 uc057skh.1:59 ENST00000484281.1:76 uc057ski.1:76 ENST00000535776.5:-107 ENST00000611151.4:-107 NM_021252:-107 NM_001256412:-107 NM_001256411:-107 NM_001256415:-107 NM_001256410:-107 NR_046172:-107 uc010qdr.3:-107 uc031ptn.1:-107 ENST00000423465.1:301 uc057skj.1:301 |
TATA-Box annotation
| Distance to TSS: | 125 |
|---|---|
| Nearest PromoterID: | NM_001256412 |
| Entrez ID: | 22931 |
| Nearest Unigene: | Hs.406799 |
| Nearest Refseq: | NM_021252 |
| Nearest Ensembl: | ENSG00000099246 |
| Gene Name: | "RAB18, member RAS oncogene family" |
| Gene Alias: | RAB18LI1 |
| Gene Description: | "RAB18, member RAS oncogene family" |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
