Difference between revisions of "TSS:Hg 104455.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.08 |distance_to_tss=164 |entrez_id=22931 |gc_percent=0.661692 |gene_alias=RAB18LI1|WARBM3 |gene_description="RAB18, member RAS oncogene family" |gen...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |WARBM3= | ||
| + | |all_trans=AK223153:1 ENST00000375802.7:-3 uc057skg.1:-3 AL136734:-9 AF274957:9 BC015014:-11 AF087860:-15 ENST00000621805.4:24 uc001itw.5:24 AF136974:-24 AB464117:24 AM393142:24 BT009840:24 CU677165:24 AF498950:24 CR533455:24 AF137372:24 AK001555:24 AK297629:-27 AK299457:-27 AK295443:-27 BC029350:-27 ENST00000465772.5:31 uc057skh.1:31 ENST00000490236.2:-32 uc057skf.1:-32 AY574034:-45 ENST00000484281.1:48 uc057ski.1:48 ENST00000356940.10:-63 uc001itv.5:-63 ENST00000535776.5:-157 ENST00000611151.4:-157 NM_021252:-157 NM_001256412:-157 NM_001256411:-157 NM_001256415:-157 NM_001256410:-157 NR_046172:-157 uc010qdr.3:-157 uc031ptn.1:-157 ENST00000423465.1:273 uc057skj.1:273 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| + | |distance=1 | ||
|distance_to_tss=164 | |distance_to_tss=164 | ||
| + | |end=27504346 | ||
|entrez_id=22931 | |entrez_id=22931 | ||
|gc_percent=0.661692 | |gc_percent=0.661692 | ||
|gene_alias=RAB18LI1|WARBM3 | |gene_alias=RAB18LI1|WARBM3 | ||
|gene_description="RAB18, member RAS oncogene family" | |gene_description="RAB18, member RAS oncogene family" | ||
| − | |gene_name=RAB18 | + | |gene_id=22931 |
| + | |gene_name="RAB18, member RAS oncogene family" | ||
| + | |gene_source=HGNC:14244 | ||
| + | |gene_symbol=RAB18 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:14244 | ||
|nearest_ensembl=ENSG00000099246 | |nearest_ensembl=ENSG00000099246 | ||
|nearest_promoter_id=NM_001256412 | |nearest_promoter_id=NM_001256412 | ||
|nearest_refseq=NM_021252 | |nearest_refseq=NM_021252 | ||
|nearest_unigene=Hs.406799 | |nearest_unigene=Hs.406799 | ||
| + | |num_trans=43 | ||
| + | |species=human | ||
| + | |start=27504330 | ||
| + | |strand=+ | ||
| + | |transcript_name=AK223153 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104455.1 | |tss_id=hg_104455.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 20:53, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AK223153 |
|---|---|
| Distance: | 1 |
| Num_trans: | 43 |
| All_trans: | AK223153:1 ENST00000375802.7:-3 uc057skg.1:-3 AL136734:-9 AF274957:9 BC015014:-11 AF087860:-15 ENST00000621805.4:24 uc001itw.5:24 AF136974:-24 AB464117:24 AM393142:24 BT009840:24 CU677165:24 AF498950:24 CR533455:24 AF137372:24 AK001555:24 AK297629:-27 AK299457:-27 AK295443:-27 BC029350:-27 ENST00000465772.5:31 uc057skh.1:31 ENST00000490236.2:-32 uc057skf.1:-32 AY574034:-45 ENST00000484281.1:48 uc057ski.1:48 ENST00000356940.10:-63 uc001itv.5:-63 ENST00000535776.5:-157 ENST00000611151.4:-157 NM_021252:-157 NM_001256412:-157 NM_001256411:-157 NM_001256415:-157 NM_001256410:-157 NR_046172:-157 uc010qdr.3:-157 uc031ptn.1:-157 ENST00000423465.1:273 uc057skj.1:273 |
TATA-Box annotation
| Distance to TSS: | 164 |
|---|---|
| Nearest PromoterID: | NM_001256412 |
| Entrez ID: | 22931 |
| Nearest Unigene: | Hs.406799 |
| Nearest Refseq: | NM_021252 |
| Nearest Ensembl: | ENSG00000099246 |
| Gene Name: | "RAB18, member RAS oncogene family" |
| Gene Alias: | RAB18LI1 |
| Gene Description: | "RAB18, member RAS oncogene family" |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.661692 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
