Difference between revisions of "TSS:Hg 104526.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.085 |distance_to_tss=56 |entrez_id=102724316 |gc_percent=0.666667 |gene_alias=- |gene_description=SVIL antisense RNA 1 |gene_name=SVIL-AS1 |gene_typ...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000423223.5:0 ENST00000445521.5:0 ENST00000623175.3:0 uc057smo.1:0 uc057smp.1:0 uc001ium.3:0 BC063483:0 AL832706:1 ENST00000446807.5:-2 uc057smn.1:-2 BC031656:-3 ENST00000438202.5:4 uc057smq.1:4 ENST00000427063.6:-10 uc001iun.3:-10 BC073888:-10 ENST00000414457.5:-24 uc001iup.4:-24 ENST00000608994.5:-25 ENST00000609413.5:-25 uc057sml.1:-25 uc057smm.1:-25 AK056080:-25 BC107795:-28 BC050354:-35 ENST00000413405.5:-43 uc001iuq.4:-43 BC066966:-43 NR_110929:-48 NR_110927:-48 NR_110926:-48 NR_110925:-48 NR_110924:-48 NR_110923:-48 NR_110922:-48 NR_110921:-48 NR_110920:-48 NR_003930:-48 ENST00000430295.5:-180 uc057smk.1:-180 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
| + | |distance=0 | ||
|distance_to_tss=56 | |distance_to_tss=56 | ||
| + | |end=29409598 | ||
|entrez_id=102724316 | |entrez_id=102724316 | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=SVIL antisense RNA 1 | |gene_description=SVIL antisense RNA 1 | ||
| − | |gene_name=SVIL-AS1 | + | |gene_id=102724316 |
| + | |gene_name=SVIL antisense RNA 1 | ||
| + | |gene_source=HGNC:51219 | ||
| + | |gene_symbol=SVIL-AS1 | ||
| + | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:51219 | ||
|nearest_ensembl=ENSG00000224597 | |nearest_ensembl=ENSG00000224597 | ||
|nearest_promoter_id=NR_110926 | |nearest_promoter_id=NR_110926 | ||
|nearest_refseq=NR_003930 | |nearest_refseq=NR_003930 | ||
|nearest_unigene=Hs.499209 | |nearest_unigene=Hs.499209 | ||
| + | |num_trans=40 | ||
| + | |species=human | ||
| + | |start=29409581 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000423223.5 ENST00000445521.5 ENST00000623175.3 uc057smo.1 uc057smp.1 uc001ium.3 BC063483 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104526.1 | |tss_id=hg_104526.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 20:56, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000423223.5 ENST00000445521.5 ENST00000623175.3 uc057smo.1 uc057smp.1 uc001ium.3 BC063483 |
|---|---|
| Distance: | 0 |
| Num_trans: | 40 |
| All_trans: | ENST00000423223.5:0 ENST00000445521.5:0 ENST00000623175.3:0 uc057smo.1:0 uc057smp.1:0 uc001ium.3:0 BC063483:0 AL832706:1 ENST00000446807.5:-2 uc057smn.1:-2 BC031656:-3 ENST00000438202.5:4 uc057smq.1:4 ENST00000427063.6:-10 uc001iun.3:-10 BC073888:-10 ENST00000414457.5:-24 uc001iup.4:-24 ENST00000608994.5:-25 ENST00000609413.5:-25 uc057sml.1:-25 uc057smm.1:-25 AK056080:-25 BC107795:-28 BC050354:-35 ENST00000413405.5:-43 uc001iuq.4:-43 BC066966:-43 NR_110929:-48 NR_110927:-48 NR_110926:-48 NR_110925:-48 NR_110924:-48 NR_110923:-48 NR_110922:-48 NR_110921:-48 NR_110920:-48 NR_003930:-48 ENST00000430295.5:-180 uc057smk.1:-180 |
TATA-Box annotation
| Distance to TSS: | 56 |
|---|---|
| Nearest PromoterID: | NR_110926 |
| Entrez ID: | 102724316 |
| Nearest Unigene: | Hs.499209 |
| Nearest Refseq: | NR_003930 |
| Nearest Ensembl: | ENSG00000224597 |
| Gene Name: | SVIL antisense RNA 1 |
| Gene Alias: | - |
| Gene Description: | SVIL antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.085 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
