Difference between revisions of "TSS:Hg 100252.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.125 |distance_to_tss=23 |entrez_id=1029 |gc_percent=0.781095 |gene_alias=ARF|CDK4I|CDKN2|CMM2|INK4|INK4A|MLM|MTS-1|MTS1|P14|P14ARF|P16|P16-INK4A|P16...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CDK4I= | ||
| + | |CDKN2= | ||
| + | |CMM2= | ||
| + | |INK4= | ||
| + | |INK4A= | ||
| + | |MLM= | ||
| + | |MTS-1= | ||
| + | |MTS1= | ||
| + | |P14= | ||
| + | |P14ARF= | ||
| + | |P16= | ||
| + | |P16-INK4A= | ||
| + | |P16INK4= | ||
| + | |P16INK4A= | ||
| + | |P19= | ||
| + | |P19ARF= | ||
| + | |TP16= | ||
| + | |all_trans=ENST00000380151.3:-16 NM_058197:-16 uc003zpj.4:-16 AF115544:-16 ENST00000579122.1:-47 uc064skb.1:-47 ENST00000498124.1:-55 uc010miu.4:-55 DQ318021:-55 KC814157:-56 L27211:-56 JQ694043:-56 JQ694044:-56 JQ694045:-56 ENST00000304494.9:-287 uc003zpk.4:-287 NM_000077:-322 NM_001195132:-322 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| + | |distance=-16 | ||
|distance_to_tss=23 | |distance_to_tss=23 | ||
| + | |end=21974811 | ||
|entrez_id=1029 | |entrez_id=1029 | ||
|gc_percent=0.781095 | |gc_percent=0.781095 | ||
|gene_alias=ARF|CDK4I|CDKN2|CMM2|INK4|INK4A|MLM|MTS-1|MTS1|P14|P14ARF|P16|P16-INK4A|P16INK4|P16INK4A|P19|P19ARF|TP16 | |gene_alias=ARF|CDK4I|CDKN2|CMM2|INK4|INK4A|MLM|MTS-1|MTS1|P14|P14ARF|P16|P16-INK4A|P16INK4|P16INK4A|P19|P19ARF|TP16 | ||
|gene_description=cyclin dependent kinase inhibitor 2A | |gene_description=cyclin dependent kinase inhibitor 2A | ||
| − | |gene_name=CDKN2A | + | |gene_id=1029 |
| + | |gene_name=cyclin-dependent kinase inhibitor 2A | ||
| + | |gene_source=HGNC:1787 | ||
| + | |gene_symbol=CDKN2A | ||
| + | |gene_synonyms=ARF CDK4I CMM2 INK4 INK4a MTS1 p14 p14ARF p16 p16INK4a p19 p19Arf | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:1787 | ||
|nearest_ensembl=ENSG00000147889 | |nearest_ensembl=ENSG00000147889 | ||
|nearest_promoter_id=NM_058197 | |nearest_promoter_id=NM_058197 | ||
|nearest_refseq=NM_000077 | |nearest_refseq=NM_000077 | ||
|nearest_unigene=Hs.512599 | |nearest_unigene=Hs.512599 | ||
| + | |num_trans=18 | ||
| + | |species=human | ||
| + | |start=21974797 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000380151.3 NM_058197 uc003zpj.4 AF115544 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100252.1 | |tss_id=hg_100252.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=G3XAG3 P42771 | ||
}} | }} | ||
Revision as of 17:04, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000380151.3 NM_058197 uc003zpj.4 AF115544 |
|---|---|
| Distance: | -16 |
| Num_trans: | 18 |
| All_trans: | ENST00000380151.3:-16 NM_058197:-16 uc003zpj.4:-16 AF115544:-16 ENST00000579122.1:-47 uc064skb.1:-47 ENST00000498124.1:-55 uc010miu.4:-55 DQ318021:-55 KC814157:-56 L27211:-56 JQ694043:-56 JQ694044:-56 JQ694045:-56 ENST00000304494.9:-287 uc003zpk.4:-287 NM_000077:-322 NM_001195132:-322 |
TATA-Box annotation
| Distance to TSS: | 23 |
|---|---|
| Nearest PromoterID: | NM_058197 |
| Entrez ID: | 1029 |
| Nearest Unigene: | Hs.512599 |
| Nearest Refseq: | NM_000077 |
| Nearest Ensembl: | ENSG00000147889 |
| Gene Name: | cyclin-dependent kinase inhibitor 2A |
| Gene Alias: | ARF |
| Gene Description: | cyclin dependent kinase inhibitor 2A |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.781095 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
