Difference between revisions of "TSS:Hg 104604.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.075 |distance_to_tss=41 |entrez_id=6935 |gc_percent=0.676617 |gene_alias=AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A |gene_description=zi...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |BZP= | ||
| + | |DELTAEF1= | ||
| + | |FECD6= | ||
| + | |NIL2A= | ||
| + | |PPCD3= | ||
| + | |TCF8= | ||
| + | |ZFHEP= | ||
| + | |ZFHX1A= | ||
| + | |all_trans=ENST00000559858.5:0 ENST00000560721.6:0 ENST00000558440.5:0 ENST00000424869.5:0 ENST00000437844.6:0 ENST00000542815.7:0 uc057sol.1:0 uc001ivv.5:0 uc057som.1:0 uc057son.1:0 uc057soo.1:0 uc010qeh.3:0 AK307510:0 AK091478:0 AK299541:0 AK310924:0 AK311137:0 AK314683:0 U12170:0 AK308822:0 BC009572:0 AL831979:0 BC065705:0 BC112392:0 BC107781:0 AK300830:0 D15050:5 AB384934:7 KJ904571:7 U19969:24 ENST00000361642.9:-27 NM_001174093:-27 NM_001174096:-27 NM_001174095:-27 NM_030751:-27 uc001ivu.5:-27 ENST00000320985.14:-74 uc001ivs.5:-74 ENST00000561304.5:-362 uc057sok.1:-362 AK311372:-362 ENST00000542879.5:-381 uc057soj.1:-381 AK294775:-381 ENST00000560196.5:-416 uc057soi.1:-416 AK309331:-416 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.075 | |cpg_percent=0.075 | ||
| + | |distance=0 | ||
|distance_to_tss=41 | |distance_to_tss=41 | ||
| + | |end=31319227 | ||
|entrez_id=6935 | |entrez_id=6935 | ||
|gc_percent=0.676617 | |gc_percent=0.676617 | ||
|gene_alias=AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A | |gene_alias=AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A | ||
|gene_description=zinc finger E-box binding homeobox 1 | |gene_description=zinc finger E-box binding homeobox 1 | ||
| − | |gene_name=ZEB1 | + | |gene_id=6935 |
| + | |gene_name=zinc finger E-box binding homeobox 1 | ||
| + | |gene_source=HGNC:11642 | ||
| + | |gene_symbol=ZEB1 | ||
| + | |gene_synonyms=AREB6 BZP FECD6 NIL-2-A ZEB Zfhep Zfhx1a | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:11642 | ||
|nearest_ensembl=ENSG00000148516 | |nearest_ensembl=ENSG00000148516 | ||
|nearest_promoter_id=NM_001323653 | |nearest_promoter_id=NM_001323653 | ||
|nearest_refseq=NM_030751 | |nearest_refseq=NM_030751 | ||
|nearest_unigene=Hs.124503 | |nearest_unigene=Hs.124503 | ||
| + | |num_trans=47 | ||
| + | |species=human | ||
| + | |start=31319198 | ||
| + | |strand=+ | ||
|tata_box="-3(GCATTTAGACAC,+,0.00)" | |tata_box="-3(GCATTTAGACAC,+,0.00)" | ||
| + | |transcript_name=ENST00000559858.5 ENST00000560721.6 ENST00000558440.5 ENST00000424869.5 ENST00000437844.6 ENST00000542815.7 uc057sol.1 uc001ivv.5 uc057som.1 uc057son.1 uc057soo.1 uc010qeh.3 AK307510 AK091478 AK299541 AK310924 AK311137 AK314683 U12170 AK308822 BC009572 AL831979 BC065705 BC112392 BC107781 AK300830 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104604.1 | |tss_id=hg_104604.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0JLS9 B2RBI8 B4DS26 F6TDF5 F6U0D0 H0YND9 P37275 Q32Q63 | ||
}} | }} | ||
Revision as of 20:59, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000559858.5 ENST00000560721.6 ENST00000558440.5 ENST00000424869.5 ENST00000437844.6 ENST00000542815.7 uc057sol.1 uc001ivv.5 uc057som.1 uc057son.1 uc057soo.1 uc010qeh.3 AK307510 AK091478 AK299541 AK310924 AK311137 AK314683 U12170 AK308822 BC009572 AL831979 BC065705 BC112392 BC107781 AK300830 |
|---|---|
| Distance: | 0 |
| Num_trans: | 47 |
| All_trans: | ENST00000559858.5:0 ENST00000560721.6:0 ENST00000558440.5:0 ENST00000424869.5:0 ENST00000437844.6:0 ENST00000542815.7:0 uc057sol.1:0 uc001ivv.5:0 uc057som.1:0 uc057son.1:0 uc057soo.1:0 uc010qeh.3:0 AK307510:0 AK091478:0 AK299541:0 AK310924:0 AK311137:0 AK314683:0 U12170:0 AK308822:0 BC009572:0 AL831979:0 BC065705:0 BC112392:0 BC107781:0 AK300830:0 D15050:5 AB384934:7 KJ904571:7 U19969:24 ENST00000361642.9:-27 NM_001174093:-27 NM_001174096:-27 NM_001174095:-27 NM_030751:-27 uc001ivu.5:-27 ENST00000320985.14:-74 uc001ivs.5:-74 ENST00000561304.5:-362 uc057sok.1:-362 AK311372:-362 ENST00000542879.5:-381 uc057soj.1:-381 AK294775:-381 ENST00000560196.5:-416 uc057soi.1:-416 AK309331:-416 |
TATA-Box annotation
| Distance to TSS: | 41 |
|---|---|
| Nearest PromoterID: | NM_001323653 |
| Entrez ID: | 6935 |
| Nearest Unigene: | Hs.124503 |
| Nearest Refseq: | NM_030751 |
| Nearest Ensembl: | ENSG00000148516 |
| Gene Name: | zinc finger E-box binding homeobox 1 |
| Gene Alias: | AREB6 |
| Gene Description: | zinc finger E-box binding homeobox 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.075 |
| GC%: | 0.676617 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-3(GCATTTAGACAC,+,0.00)" |
