Difference between revisions of "TSS:Hg 104688.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.18 |distance_to_tss=-158 |entrez_id=219771 |gc_percent=0.800995 |gene_alias=C10orf9|CBCP1|CCNX|CFP1 |gene_description=cyclin Y |gene_name=CCNY |gene...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |CBCP1= | ||
| + | |CCNX= | ||
| + | |CFP1= | ||
| + | |all_trans=ENST00000374704.7:144 ENST00000265375.13:144 ENST00000339497.7:144 NM_001282852:144 NM_001282854:144 NM_001282853:144 NM_145012:144 uc001iyw.6:144 uc001iyx.6:144 uc009xmb.5:144 AF413522:144 AY504868:144 AK314666:-176 AK303283:290 AL834355:297 BC094815:305 BC069224:318 ENST00000492478.5:322 uc057stn.1:322 BC050310:322 AF465728:323 AF465729:323 AB462996:324 AM392857:324 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.18 | |cpg_percent=0.18 | ||
| + | |distance=144 | ||
|distance_to_tss=-158 | |distance_to_tss=-158 | ||
| + | |end=35336730 | ||
|entrez_id=219771 | |entrez_id=219771 | ||
|gc_percent=0.800995 | |gc_percent=0.800995 | ||
|gene_alias=C10orf9|CBCP1|CCNX|CFP1 | |gene_alias=C10orf9|CBCP1|CCNX|CFP1 | ||
|gene_description=cyclin Y | |gene_description=cyclin Y | ||
| − | |gene_name=CCNY | + | |gene_id=219771 |
| + | |gene_name=cyclin Y | ||
| + | |gene_source=HGNC:23354 | ||
| + | |gene_symbol=CCNY | ||
| + | |gene_synonyms=CBCP1 CFP1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:23354 | ||
|nearest_ensembl=ENSG00000108100 | |nearest_ensembl=ENSG00000108100 | ||
|nearest_promoter_id=NM_145012 | |nearest_promoter_id=NM_145012 | ||
|nearest_refseq=NM_145012 | |nearest_refseq=NM_145012 | ||
|nearest_unigene=Hs.14745 | |nearest_unigene=Hs.14745 | ||
| + | |num_trans=24 | ||
| + | |species=human | ||
| + | |start=35336702 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000374704.7 ENST00000265375.13 ENST00000339497.7 NM_001282852 NM_001282854 NM_001282853 NM_145012 uc001iyw.6 uc001iyx.6 uc009xmb.5 AF413522 AY504868 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104688.1 | |tss_id=hg_104688.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q8ND76 | ||
}} | }} | ||
Revision as of 21:03, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000374704.7 ENST00000265375.13 ENST00000339497.7 NM_001282852 NM_001282854 NM_001282853 NM_145012 uc001iyw.6 uc001iyx.6 uc009xmb.5 AF413522 AY504868 |
|---|---|
| Distance: | 144 |
| Num_trans: | 24 |
| All_trans: | ENST00000374704.7:144 ENST00000265375.13:144 ENST00000339497.7:144 NM_001282852:144 NM_001282854:144 NM_001282853:144 NM_145012:144 uc001iyw.6:144 uc001iyx.6:144 uc009xmb.5:144 AF413522:144 AY504868:144 AK314666:-176 AK303283:290 AL834355:297 BC094815:305 BC069224:318 ENST00000492478.5:322 uc057stn.1:322 BC050310:322 AF465728:323 AF465729:323 AB462996:324 AM392857:324 |
TATA-Box annotation
| Distance to TSS: | -158 |
|---|---|
| Nearest PromoterID: | NM_145012 |
| Entrez ID: | 219771 |
| Nearest Unigene: | Hs.14745 |
| Nearest Refseq: | NM_145012 |
| Nearest Ensembl: | ENSG00000108100 |
| Gene Name: | cyclin Y |
| Gene Alias: | C10orf9 |
| Gene Description: | cyclin Y |
| Gene Type: | protein-coding |
| CpG%: | 0.18 |
| GC%: | 0.800995 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
