Difference between revisions of "TSS:Hg 104789.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.115 |distance_to_tss=82 |entrez_id=240 |gc_percent=0.741294 |gene_alias=5-LO|5-LOX|5LPG|LOG5 |gene_description=arachidonate 5-lipoxygenase |gene_nam...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |5-LOX= | ||
| + | |5LPG= | ||
| + | |LOG5= | ||
| + | |all_trans=BC040450:0 J03600:0 J03571:0 ENST00000374391.6:-9 uc001jce.5:-9 BC034464:-9 AB590536:16 HQ258335:18 KJ890662:18 KR711721:18 ENST00000612635.4:20 uc057syn.1:20 AK315223:-20 JQ728550:20 HM592258:20 HM592259:20 HM592260:20 HM592261:20 AK225603:-23 BC130332:-23 BC132677:-23 BC143985:-23 BC143986:-23 AB208946:-55 ENST00000542434.5:-60 NM_001256154:-60 NM_001256153:-60 NM_000698:-60 uc010qfg.3:-60 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| + | |distance=0 | ||
|distance_to_tss=82 | |distance_to_tss=82 | ||
| + | |end=45374260 | ||
|entrez_id=240 | |entrez_id=240 | ||
|gc_percent=0.741294 | |gc_percent=0.741294 | ||
|gene_alias=5-LO|5-LOX|5LPG|LOG5 | |gene_alias=5-LO|5-LOX|5LPG|LOG5 | ||
|gene_description=arachidonate 5-lipoxygenase | |gene_description=arachidonate 5-lipoxygenase | ||
| − | |gene_name=ALOX5 | + | |gene_id=240 |
| + | |gene_name=arachidonate 5-lipoxygenase | ||
| + | |gene_source=HGNC:435 | ||
| + | |gene_symbol=ALOX5 | ||
| + | |gene_synonyms=5-LOX | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:435 | ||
|nearest_ensembl=ENSG00000012779 | |nearest_ensembl=ENSG00000012779 | ||
|nearest_promoter_id=NM_001320862 | |nearest_promoter_id=NM_001320862 | ||
|nearest_refseq=NM_000698 | |nearest_refseq=NM_000698 | ||
|nearest_unigene=Hs.89499 | |nearest_unigene=Hs.89499 | ||
| + | |num_trans=29 | ||
| + | |species=human | ||
| + | |start=45374235 | ||
| + | |strand=+ | ||
| + | |transcript_name=BC040450 J03600 J03571 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104789.1 | |tss_id=hg_104789.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 21:07, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | BC040450 J03600 J03571 |
|---|---|
| Distance: | 0 |
| Num_trans: | 29 |
| All_trans: | BC040450:0 J03600:0 J03571:0 ENST00000374391.6:-9 uc001jce.5:-9 BC034464:-9 AB590536:16 HQ258335:18 KJ890662:18 KR711721:18 ENST00000612635.4:20 uc057syn.1:20 AK315223:-20 JQ728550:20 HM592258:20 HM592259:20 HM592260:20 HM592261:20 AK225603:-23 BC130332:-23 BC132677:-23 BC143985:-23 BC143986:-23 AB208946:-55 ENST00000542434.5:-60 NM_001256154:-60 NM_001256153:-60 NM_000698:-60 uc010qfg.3:-60 |
TATA-Box annotation
| Distance to TSS: | 82 |
|---|---|
| Nearest PromoterID: | NM_001320862 |
| Entrez ID: | 240 |
| Nearest Unigene: | Hs.89499 |
| Nearest Refseq: | NM_000698 |
| Nearest Ensembl: | ENSG00000012779 |
| Gene Name: | arachidonate 5-lipoxygenase |
| Gene Alias: | 5-LO |
| Gene Description: | arachidonate 5-lipoxygenase |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.741294 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
