Difference between revisions of "TSS:Hg 104794.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.1 |distance_to_tss=61 |entrez_id=253725 |gc_percent=0.736318 |gene_alias=FAM21A|FAM21C|VPEF |gene_description=WASH complex subunit 2C |gene_name=WAS...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |FAM21C= | ||
| + | |VPEF= | ||
| + | |all_trans=ENST00000336378.8:0 ENST00000623400.3:0 ENST00000420848.3:0 uc057szf.1:0 uc057szg.1:0 uc057szh.1:0 AK303048:0 AK293929:0 BC053887:0 ENST00000374362.6:-14 uc001jcu.4:-14 AB011164:-14 AK291430:-21 ENST00000540872.5:-33 ENST00000537517.5:-33 ENST00000359860.7:-33 NM_001169107:-33 NM_001169106:-33 NM_015262:-33 uc057sze.1:-33 uc010qfi.3:-33 uc010qfk.3:-33 AB383916:126 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| + | |distance=0 | ||
|distance_to_tss=61 | |distance_to_tss=61 | ||
| + | |end=45727290 | ||
|entrez_id=253725 | |entrez_id=253725 | ||
|gc_percent=0.736318 | |gc_percent=0.736318 | ||
|gene_alias=FAM21A|FAM21C|VPEF | |gene_alias=FAM21A|FAM21C|VPEF | ||
|gene_description=WASH complex subunit 2C | |gene_description=WASH complex subunit 2C | ||
| − | |gene_name= | + | |gene_id=253725 |
| + | |gene_name=family with sequence similarity 21 member C | ||
| + | |gene_source=HGNC:23414 | ||
| + | |gene_symbol=FAM21C | ||
| + | |gene_synonyms=Em:AC012044.3 KIAA0592 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:23414 | ||
|nearest_ensembl=ENSG00000172661 | |nearest_ensembl=ENSG00000172661 | ||
|nearest_promoter_id=NM_001169107 | |nearest_promoter_id=NM_001169107 | ||
|nearest_refseq=NM_015262 | |nearest_refseq=NM_015262 | ||
|nearest_unigene=Hs.365286 | |nearest_unigene=Hs.365286 | ||
| + | |num_trans=23 | ||
| + | |species=human | ||
| + | |start=45727232 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000336378.8 ENST00000623400.3 ENST00000420848.3 uc057szf.1 uc057szg.1 uc057szh.1 AK303048 AK293929 BC053887 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104794.1 | |tss_id=hg_104794.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A096LPC5 A0A0A0MR88 A0A0A0MT65 B4DF48 | ||
}} | }} | ||
Revision as of 21:07, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000336378.8 ENST00000623400.3 ENST00000420848.3 uc057szf.1 uc057szg.1 uc057szh.1 AK303048 AK293929 BC053887 |
|---|---|
| Distance: | 0 |
| Num_trans: | 23 |
| All_trans: | ENST00000336378.8:0 ENST00000623400.3:0 ENST00000420848.3:0 uc057szf.1:0 uc057szg.1:0 uc057szh.1:0 AK303048:0 AK293929:0 BC053887:0 ENST00000374362.6:-14 uc001jcu.4:-14 AB011164:-14 AK291430:-21 ENST00000540872.5:-33 ENST00000537517.5:-33 ENST00000359860.7:-33 NM_001169107:-33 NM_001169106:-33 NM_015262:-33 uc057sze.1:-33 uc010qfi.3:-33 uc010qfk.3:-33 AB383916:126 |
TATA-Box annotation
| Distance to TSS: | 61 |
|---|---|
| Nearest PromoterID: | NM_001169107 |
| Entrez ID: | 253725 |
| Nearest Unigene: | Hs.365286 |
| Nearest Refseq: | NM_015262 |
| Nearest Ensembl: | ENSG00000172661 |
| Gene Name: | family with sequence similarity 21 member C |
| Gene Alias: | FAM21A |
| Gene Description: | WASH complex subunit 2C |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.736318 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
