Difference between revisions of "TSS:Hg 104817.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.12 |distance_to_tss=55 |entrez_id=83849 |gc_percent=0.781095 |gene_alias=CHR10SYT|sytXV |gene_description=synaptotagmin 15 |gene_name=SYT15 |gene_ty...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000512997.5:8 uc057tal.1:8 ENST00000374321.8:26 uc001jea.4:26 NM_181519:-50 NM_031912:-50 ENST00000503753.5:57 uc057tam.1:57 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| + | |distance=8 | ||
|distance_to_tss=55 | |distance_to_tss=55 | ||
| + | |end=46579076 | ||
|entrez_id=83849 | |entrez_id=83849 | ||
|gc_percent=0.781095 | |gc_percent=0.781095 | ||
|gene_alias=CHR10SYT|sytXV | |gene_alias=CHR10SYT|sytXV | ||
|gene_description=synaptotagmin 15 | |gene_description=synaptotagmin 15 | ||
| − | |gene_name=SYT15 | + | |gene_id=102724488 83849 |
| + | |gene_name=synaptotagmin 15 | ||
| + | |gene_source=HGNC:17167 | ||
| + | |gene_symbol=SYT15 | ||
| + | |gene_synonyms=CHR10SYT | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:17167 | ||
|nearest_ensembl=ENSG00000204176 | |nearest_ensembl=ENSG00000204176 | ||
|nearest_promoter_id=NM_181519 | |nearest_promoter_id=NM_181519 | ||
|nearest_refseq=NM_031912 | |nearest_refseq=NM_031912 | ||
|nearest_unigene=Hs.696346 | |nearest_unigene=Hs.696346 | ||
| + | |num_trans=8 | ||
| + | |species=human | ||
| + | |start=46579065 | ||
| + | |strand=+ | ||
| + | |sytXV= | ||
|tata_box="25(CGCTTTAAGAGA,-,0.00),26(GCTTTAAGAGAC,+,0.00)" | |tata_box="25(CGCTTTAAGAGA,-,0.00),26(GCTTTAAGAGAC,+,0.00)" | ||
| + | |transcript_name=ENST00000512997.5 uc057tal.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104817.1 | |tss_id=hg_104817.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=D6RF99 | ||
}} | }} | ||
Revision as of 21:08, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000512997.5 uc057tal.1 |
|---|---|
| Distance: | 8 |
| Num_trans: | 8 |
| All_trans: | ENST00000512997.5:8 uc057tal.1:8 ENST00000374321.8:26 uc001jea.4:26 NM_181519:-50 NM_031912:-50 ENST00000503753.5:57 uc057tam.1:57 |
TATA-Box annotation
| Distance to TSS: | 55 |
|---|---|
| Nearest PromoterID: | NM_181519 |
| Entrez ID: | 83849 |
| Nearest Unigene: | Hs.696346 |
| Nearest Refseq: | NM_031912 |
| Nearest Ensembl: | ENSG00000204176 |
| Gene Name: | synaptotagmin 15 |
| Gene Alias: | CHR10SYT |
| Gene Description: | synaptotagmin 15 |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.781095 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "25(CGCTTTAAGAGA,-,0.00),26(GCTTTAAGAGAC,+,0.00)" |
