Difference between revisions of "TSS:Hg 104840.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.185 |distance_to_tss=38 |entrez_id=5599 |gc_percent=0.80597 |gene_alias=JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c |gene_description=mitoge...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |JNK-46= | ||
| + | |JNK1= | ||
| + | |JNK1A2= | ||
| + | |JNK21B1/2= | ||
| + | |PRKM8= | ||
| + | |SAPK1= | ||
| + | |SAPK1c= | ||
| + | |all_trans=ENST00000429041.5:0 ENST00000374189.5:0 uc057tcs.1:0 uc001jgp.5:0 ENST00000432379.5:-6 uc057tcr.1:-6 ENST00000395611.7:-22 NM_001278547:-22 uc001jgn.5:-22 AK292523:50 ENST00000426557.5:333 uc057tct.1:333 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.185 | |cpg_percent=0.185 | ||
| + | |distance=0 | ||
|distance_to_tss=38 | |distance_to_tss=38 | ||
| + | |end=48306693 | ||
|entrez_id=5599 | |entrez_id=5599 | ||
|gc_percent=0.80597 | |gc_percent=0.80597 | ||
|gene_alias=JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c | |gene_alias=JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c | ||
|gene_description=mitogen-activated protein kinase 8 | |gene_description=mitogen-activated protein kinase 8 | ||
| − | |gene_name=MAPK8 | + | |gene_id=5599 |
| + | |gene_name=mitogen-activated protein kinase 8 | ||
| + | |gene_source=HGNC:6881 | ||
| + | |gene_symbol=MAPK8 | ||
| + | |gene_synonyms=JNK JNK1 SAPK1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:6881 | ||
|nearest_ensembl=ENSG00000107643 | |nearest_ensembl=ENSG00000107643 | ||
|nearest_promoter_id=NM_001323321 | |nearest_promoter_id=NM_001323321 | ||
|nearest_refseq=NM_002750 | |nearest_refseq=NM_002750 | ||
|nearest_unigene=Hs.138211 | |nearest_unigene=Hs.138211 | ||
| + | |num_trans=12 | ||
| + | |species=human | ||
| + | |start=48306660 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000429041.5 ENST00000374189.5 uc057tcs.1 uc001jgp.5 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104840.1 | |tss_id=hg_104840.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=C9JWQ4 P45983 | ||
}} | }} | ||
Revision as of 21:09, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000429041.5 ENST00000374189.5 uc057tcs.1 uc001jgp.5 |
|---|---|
| Distance: | 0 |
| Num_trans: | 12 |
| All_trans: | ENST00000429041.5:0 ENST00000374189.5:0 uc057tcs.1:0 uc001jgp.5:0 ENST00000432379.5:-6 uc057tcr.1:-6 ENST00000395611.7:-22 NM_001278547:-22 uc001jgn.5:-22 AK292523:50 ENST00000426557.5:333 uc057tct.1:333 |
TATA-Box annotation
| Distance to TSS: | 38 |
|---|---|
| Nearest PromoterID: | NM_001323321 |
| Entrez ID: | 5599 |
| Nearest Unigene: | Hs.138211 |
| Nearest Refseq: | NM_002750 |
| Nearest Ensembl: | ENSG00000107643 |
| Gene Name: | mitogen-activated protein kinase 8 |
| Gene Alias: | JNK |
| Gene Description: | mitogen-activated protein kinase 8 |
| Gene Type: | protein-coding |
| CpG%: | 0.185 |
| GC%: | 0.80597 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
