Difference between revisions of "TSS:Hg 104901.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.115 |distance_to_tss=25 |entrez_id=282966 |gc_percent=0.716418 |gene_alias=- |gene_description=chromosome 10 open reading frame 53 |gene_name=C10orf...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000374113.3:0 ENST00000374111.7:0 ENST00000374112.7:0 ENST00000535836.1:0 NM_182554:0 NM_001042427:0 uc001jic.2:0 uc001jib.4:0 uc001jid.2:0 uc057tfa.1:0 AK091773:0 BC028127:0 KJ900538:9 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| + | |distance=0 | ||
|distance_to_tss=25 | |distance_to_tss=25 | ||
| + | |end=49679689 | ||
|entrez_id=282966 | |entrez_id=282966 | ||
|gc_percent=0.716418 | |gc_percent=0.716418 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=chromosome 10 open reading frame 53 | |gene_description=chromosome 10 open reading frame 53 | ||
| − | |gene_name=C10orf53 | + | |gene_id=282966 |
| + | |gene_name=chromosome 10 open reading frame 53 | ||
| + | |gene_source=HGNC:27421 | ||
| + | |gene_symbol=C10orf53 | ||
| + | |gene_synonyms=Em:AC069546.1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:27421 | ||
|nearest_ensembl=ENSG00000178645 | |nearest_ensembl=ENSG00000178645 | ||
|nearest_promoter_id=NM_001042427 | |nearest_promoter_id=NM_001042427 | ||
|nearest_refseq=NM_182554 | |nearest_refseq=NM_182554 | ||
|nearest_unigene=Hs.131287 | |nearest_unigene=Hs.131287 | ||
| + | |num_trans=13 | ||
| + | |species=human | ||
| + | |start=49679637 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000374113.3 ENST00000374111.7 ENST00000374112.7 ENST00000535836.1 NM_182554 NM_001042427 uc001jic.2 uc001jib.4 uc001jid.2 uc057tfa.1 AK091773 BC028127 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104901.1 | |tss_id=hg_104901.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q8N6V4 | ||
}} | }} | ||
Revision as of 21:12, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000374113.3 ENST00000374111.7 ENST00000374112.7 ENST00000535836.1 NM_182554 NM_001042427 uc001jic.2 uc001jib.4 uc001jid.2 uc057tfa.1 AK091773 BC028127 |
|---|---|
| Distance: | 0 |
| Num_trans: | 13 |
| All_trans: | ENST00000374113.3:0 ENST00000374111.7:0 ENST00000374112.7:0 ENST00000535836.1:0 NM_182554:0 NM_001042427:0 uc001jic.2:0 uc001jib.4:0 uc001jid.2:0 uc057tfa.1:0 AK091773:0 BC028127:0 KJ900538:9 |
TATA-Box annotation
| Distance to TSS: | 25 |
|---|---|
| Nearest PromoterID: | NM_001042427 |
| Entrez ID: | 282966 |
| Nearest Unigene: | Hs.131287 |
| Nearest Refseq: | NM_182554 |
| Nearest Ensembl: | ENSG00000178645 |
| Gene Name: | chromosome 10 open reading frame 53 |
| Gene Alias: | - |
| Gene Description: | chromosome 10 open reading frame 53 |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.716418 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
