Difference between revisions of "TSS:Hg 104941.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.085 |distance_to_tss=1 |entrez_id=22943 |gc_percent=0.676617 |gene_alias=DKK-1|SK |gene_description=dickkopf WNT signaling pathway inhibitor 1 |gene...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |SK= | ||
| + | |all_trans=NM_012242:0 AK314902:0 ENST00000373970.3:6 uc001jjr.4:6 BC001539:6 AY359005:8 JN966744:-22 AF127563:28 AF177394:66 CU674754:145 AB528499:145 DQ895421:145 DQ892222:145 KJ893312:145 ENST00000467359.5:390 uc057thk.1:390 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
| + | |distance=0 | ||
|distance_to_tss=1 | |distance_to_tss=1 | ||
| + | |end=52314290 | ||
|entrez_id=22943 | |entrez_id=22943 | ||
|gc_percent=0.676617 | |gc_percent=0.676617 | ||
|gene_alias=DKK-1|SK | |gene_alias=DKK-1|SK | ||
|gene_description=dickkopf WNT signaling pathway inhibitor 1 | |gene_description=dickkopf WNT signaling pathway inhibitor 1 | ||
| − | |gene_name=DKK1 | + | |gene_id=22943 |
| + | |gene_name=dickkopf WNT signaling pathway inhibitor 1 | ||
| + | |gene_source=HGNC:2891 | ||
| + | |gene_symbol=DKK1 | ||
| + | |gene_synonyms=DKK-1 SK | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:2891 | ||
|nearest_ensembl=ENSG00000107984 | |nearest_ensembl=ENSG00000107984 | ||
|nearest_promoter_id=NM_012242 | |nearest_promoter_id=NM_012242 | ||
|nearest_refseq=NM_012242 | |nearest_refseq=NM_012242 | ||
|nearest_unigene=Hs.40499 | |nearest_unigene=Hs.40499 | ||
| + | |num_trans=16 | ||
| + | |species=human | ||
| + | |start=52314273 | ||
| + | |strand=+ | ||
|tata_box="-34(CGGTATAAAGGC,-,0.00)" | |tata_box="-34(CGGTATAAAGGC,-,0.00)" | ||
| + | |transcript_name=NM_012242 AK314902 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104941.1 | |tss_id=hg_104941.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=O94907 | ||
}} | }} | ||
Revision as of 21:14, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_012242 AK314902 |
|---|---|
| Distance: | 0 |
| Num_trans: | 16 |
| All_trans: | NM_012242:0 AK314902:0 ENST00000373970.3:6 uc001jjr.4:6 BC001539:6 AY359005:8 JN966744:-22 AF127563:28 AF177394:66 CU674754:145 AB528499:145 DQ895421:145 DQ892222:145 KJ893312:145 ENST00000467359.5:390 uc057thk.1:390 |
TATA-Box annotation
| Distance to TSS: | 1 |
|---|---|
| Nearest PromoterID: | NM_012242 |
| Entrez ID: | 22943 |
| Nearest Unigene: | Hs.40499 |
| Nearest Refseq: | NM_012242 |
| Nearest Ensembl: | ENSG00000107984 |
| Gene Name: | dickkopf WNT signaling pathway inhibitor 1 |
| Gene Alias: | DKK-1 |
| Gene Description: | dickkopf WNT signaling pathway inhibitor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.676617 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-34(CGGTATAAAGGC,-,0.00)" |
