Difference between revisions of "TSS:Hg 105190.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.015 |distance_to_tss=-414412 |entrez_id=221037 |gc_percent=0.467662 |gene_alias=KDM3C|TRIP-8|TRIP8 |gene_description=jumonji domain containing 1C |g...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |TRIP-8= | ||
| + | |TRIP8= | ||
| + | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| + | |distance= | ||
|distance_to_tss=-414412 | |distance_to_tss=-414412 | ||
| + | |end=63936499 | ||
|entrez_id=221037 | |entrez_id=221037 | ||
|gc_percent=0.467662 | |gc_percent=0.467662 | ||
| Line 12: | Line 17: | ||
|nearest_refseq=NM_004241 | |nearest_refseq=NM_004241 | ||
|nearest_unigene=Hs.413416 | |nearest_unigene=Hs.413416 | ||
| + | |num_trans=0 | ||
| + | |species=human | ||
| + | |start=63936474 | ||
| + | |strand=+ | ||
|tata_box="-97(TGGTATTAAAAG,-,0.00),-81(GGCCTTTAAGAG,-,0.00),-80(GCCTTTAAGAGG,-,0.00),-79(CCTTTAAGAGGT,+,0.00)" | |tata_box="-97(TGGTATTAAAAG,-,0.00),-81(GGCCTTTAAGAG,-,0.00),-80(GCCTTTAAGAGG,-,0.00),-79(CCTTTAAGAGGT,+,0.00)" | ||
| + | |transcript_name= | ||
| + | |tss_classification=no | ||
|tss_id=hg_105190.1 | |tss_id=hg_105190.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Revision as of 21:25, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | -414412 |
|---|---|
| Nearest PromoterID: | NM_001322258 |
| Entrez ID: | 221037 |
| Nearest Unigene: | Hs.413416 |
| Nearest Refseq: | NM_004241 |
| Nearest Ensembl: | ENSG00000171988 |
| Gene Name: | JMJD1C |
| Gene Alias: | KDM3C |
| Gene Description: | jumonji domain containing 1C |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.467662 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-97(TGGTATTAAAAG,-,0.00),-81(GGCCTTTAAGAG,-,0.00),-80(GCCTTTAAGAGG,-,0.00),-79(CCTTTAAGAGGT,+,0.00)" |
