Difference between revisions of "TSS:Hg 100320.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.115 |distance_to_tss=134 |entrez_id=80173 |gc_percent=0.711443 |gene_alias=BBS20|CCDC2|CMG-1|CMG1 |gene_description=intraflagellar transport 74 |gen...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CCDC2= | ||
| + | |CMG-1= | ||
| + | |CMG1= | ||
| + | |all_trans=BC032551:0 AK001642:0 AK022761:0 ENST00000520884.5:-19 uc003zqe.3:-19 AK002143:-19 AF145020:-47 AB385043:84 EU176453:85 EU176795:85 KJ898010:86 ENST00000523212.1:149 uc064slw.1:149 ENST00000397292.7:-249 uc003zqd.4:-249 AL133608:-249 NM_001031689:-256 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| + | |distance=0 | ||
|distance_to_tss=134 | |distance_to_tss=134 | ||
| + | |end=26947214 | ||
|entrez_id=80173 | |entrez_id=80173 | ||
|gc_percent=0.711443 | |gc_percent=0.711443 | ||
|gene_alias=BBS20|CCDC2|CMG-1|CMG1 | |gene_alias=BBS20|CCDC2|CMG-1|CMG1 | ||
|gene_description=intraflagellar transport 74 | |gene_description=intraflagellar transport 74 | ||
| − | |gene_name= | + | |gene_id=9373 |
| + | |gene_name=phospholipase A2 activating protein | ||
| + | |gene_source=HGNC:9043 | ||
| + | |gene_symbol=PLAA | ||
| + | |gene_synonyms=DOA1 FLJ11281 FLJ12699 PLA2P PLAP | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:9043 | ||
|nearest_ensembl=ENSG00000096872 | |nearest_ensembl=ENSG00000096872 | ||
|nearest_promoter_id=NM_001099223 | |nearest_promoter_id=NM_001099223 | ||
|nearest_refseq=NM_025103 | |nearest_refseq=NM_025103 | ||
|nearest_unigene=Hs.145402 | |nearest_unigene=Hs.145402 | ||
| + | |num_trans=17 | ||
| + | |species=human | ||
| + | |start=26947131 | ||
| + | |strand=- | ||
| + | |transcript_name=BC032551 AK001642 AK022761 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100320.1 | |tss_id=hg_100320.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 17:06, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | BC032551 AK001642 AK022761 |
|---|---|
| Distance: | 0 |
| Num_trans: | 17 |
| All_trans: | BC032551:0 AK001642:0 AK022761:0 ENST00000520884.5:-19 uc003zqe.3:-19 AK002143:-19 AF145020:-47 AB385043:84 EU176453:85 EU176795:85 KJ898010:86 ENST00000523212.1:149 uc064slw.1:149 ENST00000397292.7:-249 uc003zqd.4:-249 AL133608:-249 NM_001031689:-256 |
TATA-Box annotation
| Distance to TSS: | 134 |
|---|---|
| Nearest PromoterID: | NM_001099223 |
| Entrez ID: | 80173 |
| Nearest Unigene: | Hs.145402 |
| Nearest Refseq: | NM_025103 |
| Nearest Ensembl: | ENSG00000096872 |
| Gene Name: | phospholipase A2 activating protein |
| Gene Alias: | BBS20 |
| Gene Description: | intraflagellar transport 74 |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.711443 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
