Difference between revisions of "TSS:Hg 105246.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.045 |distance_to_tss=-64 |entrez_id=80312 |gc_percent=0.641791 |gene_alias=CXXC6|LCX|MLL-TET1|TET1-MLL|bA119F7.1 |gene_description=tet methylcytosin...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |LCX= | ||
| + | |MLL-TET1= | ||
| + | |TET1-MLL= | ||
| + | |all_trans=NM_030625:52 ENST00000373644.4:348 uc001jok.5:348 AF430147:348 | ||
| + | |bA119F7.1= | ||
| + | |chr=chr10 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| + | |distance=52 | ||
|distance_to_tss=-64 | |distance_to_tss=-64 | ||
| + | |end=68560308 | ||
|entrez_id=80312 | |entrez_id=80312 | ||
|gc_percent=0.641791 | |gc_percent=0.641791 | ||
|gene_alias=CXXC6|LCX|MLL-TET1|TET1-MLL|bA119F7.1 | |gene_alias=CXXC6|LCX|MLL-TET1|TET1-MLL|bA119F7.1 | ||
|gene_description=tet methylcytosine dioxygenase 1 | |gene_description=tet methylcytosine dioxygenase 1 | ||
| − | |gene_name=TET1 | + | |gene_id=80312 |
| + | |gene_name=tet methylcytosine dioxygenase 1 | ||
| + | |gene_source=HGNC:29484 | ||
| + | |gene_symbol=TET1 | ||
| + | |gene_synonyms=KIAA1676 LCX bA119F7.1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:29484 | ||
|nearest_ensembl=ENSG00000138336 | |nearest_ensembl=ENSG00000138336 | ||
|nearest_promoter_id=NM_030625 | |nearest_promoter_id=NM_030625 | ||
|nearest_refseq=NM_030625 | |nearest_refseq=NM_030625 | ||
|nearest_unigene=Hs.258855 | |nearest_unigene=Hs.258855 | ||
| + | |num_trans=4 | ||
| + | |species=human | ||
| + | |start=68560284 | ||
| + | |strand=+ | ||
| + | |transcript_name=NM_030625 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105246.1 | |tss_id=hg_105246.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q8NFU7 | ||
}} | }} | ||
Revision as of 21:27, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | NM_030625 |
|---|---|
| Distance: | 52 |
| Num_trans: | 4 |
| All_trans: | NM_030625:52 ENST00000373644.4:348 uc001jok.5:348 AF430147:348 |
TATA-Box annotation
| Distance to TSS: | -64 |
|---|---|
| Nearest PromoterID: | NM_030625 |
| Entrez ID: | 80312 |
| Nearest Unigene: | Hs.258855 |
| Nearest Refseq: | NM_030625 |
| Nearest Ensembl: | ENSG00000138336 |
| Gene Name: | tet methylcytosine dioxygenase 1 |
| Gene Alias: | CXXC6 |
| Gene Description: | tet methylcytosine dioxygenase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.641791 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
