Difference between revisions of "TSS:Hg 100321.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.105 |distance_to_tss=-65 |entrez_id=80173 |gc_percent=0.681592 |gene_alias=BBS20|CCDC2|CMG-1|CMG1 |gene_description=intraflagellar transport 74 |gen...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CCDC2= | ||
| + | |CMG-1= | ||
| + | |CMG1= | ||
| + | |all_trans=ENST00000520884.5:0 uc003zqe.3:0 AF145020:0 AK002143:0 AK001642:50 AK022761:75 BC032551:82 AB385043:175 EU176453:176 EU176795:176 KJ898010:177 ENST00000397292.7:-191 uc003zqd.4:-191 AL133608:-191 NM_001031689:-198 ENST00000523212.1:240 uc064slw.1:240 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| + | |distance=0 | ||
|distance_to_tss=-65 | |distance_to_tss=-65 | ||
| + | |end=26947272 | ||
|entrez_id=80173 | |entrez_id=80173 | ||
|gc_percent=0.681592 | |gc_percent=0.681592 | ||
|gene_alias=BBS20|CCDC2|CMG-1|CMG1 | |gene_alias=BBS20|CCDC2|CMG-1|CMG1 | ||
|gene_description=intraflagellar transport 74 | |gene_description=intraflagellar transport 74 | ||
| − | |gene_name= | + | |gene_id=9373 |
| + | |gene_name=phospholipase A2 activating protein | ||
| + | |gene_source=HGNC:9043 | ||
| + | |gene_symbol=PLAA | ||
| + | |gene_synonyms=DOA1 FLJ11281 FLJ12699 PLA2P PLAP | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:9043 | ||
|nearest_ensembl=ENSG00000096872 | |nearest_ensembl=ENSG00000096872 | ||
|nearest_promoter_id=NM_001099222 | |nearest_promoter_id=NM_001099222 | ||
|nearest_refseq=NM_025103 | |nearest_refseq=NM_025103 | ||
|nearest_unigene=Hs.145402 | |nearest_unigene=Hs.145402 | ||
| + | |num_trans=17 | ||
| + | |species=human | ||
| + | |start=26947222 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000520884.5 uc003zqe.3 AF145020 AK002143 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100321.1 | |tss_id=hg_100321.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=E5RIM3 | ||
}} | }} | ||
Revision as of 17:06, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000520884.5 uc003zqe.3 AF145020 AK002143 |
|---|---|
| Distance: | 0 |
| Num_trans: | 17 |
| All_trans: | ENST00000520884.5:0 uc003zqe.3:0 AF145020:0 AK002143:0 AK001642:50 AK022761:75 BC032551:82 AB385043:175 EU176453:176 EU176795:176 KJ898010:177 ENST00000397292.7:-191 uc003zqd.4:-191 AL133608:-191 NM_001031689:-198 ENST00000523212.1:240 uc064slw.1:240 |
TATA-Box annotation
| Distance to TSS: | -65 |
|---|---|
| Nearest PromoterID: | NM_001099222 |
| Entrez ID: | 80173 |
| Nearest Unigene: | Hs.145402 |
| Nearest Refseq: | NM_025103 |
| Nearest Ensembl: | ENSG00000096872 |
| Gene Name: | phospholipase A2 activating protein |
| Gene Alias: | BBS20 |
| Gene Description: | intraflagellar transport 74 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.681592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
